View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19961_low_10 (Length: 385)
Name: NF19961_low_10
Description: NF19961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19961_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 26886024 - 26886390
Alignment:
| Q |
1 |
ttatcggcatcattttcaacgatcacaccggaacattgattcaattcttggtcccctataaaggaagaaaaaacaatgattattgtaatgtagcaagatc |
100 |
Q |
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| T |
26886024 |
ttattggcatcattttcaacgatcacaccggaacattgattcaattcttggtcccctataaaggaa-aaaaagcaatgattattgtaatgtagcaagatc |
26886122 |
T |
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| Q |
101 |
attaaaagaaagagagaaagggaatttgagagttgaatagaatacaataccagtagtataagataaaagagcaacaacagaagaagaaaccttaagagca |
200 |
Q |
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| T |
26886123 |
attaaaagaaagagagaaaaggaattggagagttgaatagaatacaataccagtagtataagataaaagagcaacaacagaagaagaaaccttaagagca |
26886222 |
T |
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| Q |
201 |
gctttctttgtctgtatatccagaaagacattatcatctttagaattgaactttggtcgcttagataagttttttatgcgatgcataagttccggatccg |
300 |
Q |
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| T |
26886223 |
gctttctttgtctgtaaatccagaaagacattatcatctttagaattgaactttggtcgcttagataagttttttatgcgatgcataagttccggatccg |
26886322 |
T |
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| Q |
301 |
gctctgcatgcaacaatggattatttgtctgtgacatagattaagtacttaattaagaataatagttt |
368 |
Q |
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| T |
26886323 |
gctctgcatgcaacaatggattatttgtctgtgacatagattaagtacttaattaagaataatagttt |
26886390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 103 - 234
Target Start/End: Complemental strand, 26631216 - 26631080
Alignment:
| Q |
103 |
taaaagaaagagagaaagggaatttgagagttgaatagaatacaata-----ccagtagtataagataaaagagcaacaacagaagaagaaaccttaaga |
197 |
Q |
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| T |
26631216 |
taaaagaaagagagaaagggaattggaaagttgaatagaatagaataaaataccagtagtataagataaaagagcaacaacagaagaagaagccttgaga |
26631117 |
T |
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| Q |
198 |
gcagctttctttgtctgtatatccagaaagacattat |
234 |
Q |
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| T |
26631116 |
gcagctttctttgtatttacatccagataggcattat |
26631080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 26631308 - 26631252
Alignment:
| Q |
1 |
ttatcggcatcattttcaacgatcacaccggaacattgattcaattcttggtcccct |
57 |
Q |
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|||| |||||||||||||| ||| ||||| ||||||||||| || |||||||||||| |
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| T |
26631308 |
ttattggcatcattttcaatgataacaccagaacattgattaaactcttggtcccct |
26631252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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