View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19961_low_14 (Length: 323)
Name: NF19961_low_14
Description: NF19961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19961_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 6 - 307
Target Start/End: Original strand, 40122752 - 40123053
Alignment:
| Q |
6 |
gtcgaagaatataactaaagaaacaaggatgatgttaaatgttaatggaccaacaatttacacttacatgaaatcatatagattttaatcaaatcctacc |
105 |
Q |
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| T |
40122752 |
gtcgaggaaaataactaaagaaacaaggatgatgttaaatgttaatggaccaacaatttacacctacatgaaatcatatagattttaatcaaatcctacc |
40122851 |
T |
|
| Q |
106 |
cgaagcacttcaaaaacctaacaaaagtacactaatcaaccaccacttttattgagtgaaaaacaatttaaacaaccagtagctagtttatatttctact |
205 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40122852 |
cgaagcacttcaaaaacttaacgaaagtacactaatcaaccaccacttttattgagtgaaaaacaatttaaacaaccagtagctaatttatatttctact |
40122951 |
T |
|
| Q |
206 |
cgaaacctgaacataacatgaggaaaattcataaataaatttaaagaatatgagtaaaatgattcaaaatttatgtgaaccaaaattaagctatggcata |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40122952 |
cgaaacctgaacataacatgaggaaaattcataaataaatttaaagaatatgagtaaaatgattcaaaatgtatgtgaaccaaaattaagctatggcata |
40123051 |
T |
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| Q |
306 |
at |
307 |
Q |
| |
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|| |
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| T |
40123052 |
at |
40123053 |
T |
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