View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19961_low_15 (Length: 314)
Name: NF19961_low_15
Description: NF19961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19961_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 6474283 - 6474583
Alignment:
| Q |
1 |
catatatatgcaacactcaatatgtcatgcgatcaattatgctaatacaaagtagctatctagtctttgcaacgtaagttgctctagtttgtaagatgtt |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6474283 |
catatatatgcaacgctcaatatgtcatgcgatcaattatgctaatacaaagtagctatctagtctttgcaacgtaagttgctctagtttgtaagatgtt |
6474382 |
T |
|
| Q |
101 |
gtgggccaaatacattaaacatcaaagtctaaatgaaagaatnnnnnnnnttatgagtattatatgagctttttattaccaccttgaggataggtgtatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6474383 |
atgggccaaatacattaaacatcaaagtctaaatgaaagaat-aaaaaaattatgagtattatataagctttttattaccaccttgaggataggtgtatg |
6474481 |
T |
|
| Q |
201 |
tgaagatcaatgaaatgtaatgattcaaaatagattcaatagaatataataagttcaagttggatagagatcttttaaatgataagtcatgttttttaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
6474482 |
tgaagatcaatgaaatgtaatgattcaaaatagattcaatagaatataataagttcaagttg------gatgttttaaatgataagtcatgttttttaga |
6474575 |
T |
|
| Q |
301 |
ataatcta |
308 |
Q |
| |
|
| |||||| |
|
|
| T |
6474576 |
agaatcta |
6474583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University