View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19961_low_2 (Length: 736)
Name: NF19961_low_2
Description: NF19961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19961_low_2 |
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| [»] scaffold0891 (2 HSPs) |
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| [»] scaffold1335 (1 HSPs) |
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| [»] scaffold2086 (1 HSPs) |
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| [»] scaffold1996 (1 HSPs) |
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Alignment Details
Target: scaffold0891 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 10 - 530
Target Start/End: Original strand, 3998 - 4517
Alignment:
| Q |
10 |
agaacctgtgatggaaatgatggaaggagaaaaggaagaagaattgagacaaagtgcttggagtggaagaagaaagctagaactaatttgaggggatcat |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3998 |
agaacttgtgatggaaatgatggaaggagaaaaggaagaagaattgagacaaagtgcttggagtggaagaagaaagctagaactaatttgaggg-atcat |
4096 |
T |
|
| Q |
110 |
catacaataatttccagaagtttatcaaagaggttattgataataaagctatttgaattccaaatacaagtttagtatggtctatgtattttgttgagat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4097 |
catacaataatttccagaagtttatcaaagaggttattgataataaagctatttgaattccaaatacaagtttagtatggtctatgtattttgttgagat |
4196 |
T |
|
| Q |
210 |
gcaacatttctgttctattacttttagctaaactatttccacttcatatttatggttttattattgtaagttcttatgattgactatatgcaatatttta |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4197 |
gcaacatttctgttctattacttttagctaaactatttccacttcatatttatggttttattattttaagttcttatgattgactatatgcaatatttta |
4296 |
T |
|
| Q |
310 |
tggggaaaaaacacttaattaatcattatacgattgatagaaataaatagttatcataatgatcaaatgtacatatgtcttgaaaatcttggaaacatat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4297 |
tggggaaaaaacacttaattaatcattatacgattgatagaaataaatagttatcataatgatcaaatgtacatatgtcttgaaaatcttggaaacatat |
4396 |
T |
|
| Q |
410 |
atttctaaaattatcttccaacacctataaatatgcaacatatgaatgtattttgtatgagcacttgattcctatagtgtttcaactatccatcactgtt |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4397 |
atttctaaaattatcttccaacacctataaatatgcaacatatgaatgtattttgtatgagcacttgattcctatagtgttccaactatccatcactgtt |
4496 |
T |
|
| Q |
510 |
attctcctatgataatgccat |
530 |
Q |
| |
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||||||||||||||||||||| |
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| T |
4497 |
attctcctatgataatgccat |
4517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 3619 - 3687
Alignment:
| Q |
20 |
atggaaatgatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagct |
87 |
Q |
| |
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|||||||||||| || ||||||||| | ||||| ||||||| ||||||||||| ||||||||||||||| |
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| T |
3619 |
atggaaatgatgaaacgagaaaagggaaaagaaatgagacacaagtgcttggaatggaagaagaaagct |
3687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 183; Significance: 1e-98; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 526 - 719
Target Start/End: Complemental strand, 35777162 - 35776968
Alignment:
| Q |
526 |
gccatgatagtgtctctttctccttttccattgatggaatcgacaatt-acattctaatatcaaaataacccgatgttattatacaagtttcatccaatg |
624 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35777162 |
gccatgatagtgtctctttctccttttccattgatggaatcgacaatttacattctaatatcaaaataacccgatgttattatacaagtttcatccaatg |
35777063 |
T |
|
| Q |
625 |
acacacaaaagtgattaacatataaaataaagagggggaataaatgtgatgttattatttaagtttcattcaagagctataaatttacagtttgt |
719 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35777062 |
acacacaaaagcgattaacatataaaataaagagggggaataaatgtgatgttattatttaagtttcattcaagagctataaatttacagtttgt |
35776968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 24 - 313
Target Start/End: Complemental strand, 35774468 - 35774168
Alignment:
| Q |
24 |
aaatgatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagctagaa------ctaatttgaggggatcatcatacaa |
116 |
Q |
| |
|
||||||||||||||||||||| | ||||| ||||||| ||||||||||||||||||||||||||||||| |||||||| | |||||||||||||| |
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|
| T |
35774468 |
aaatgatggaaggagaaaagggaaaagaaatgagacacaagtgcttggagtggaagaagaaagctagaaaagctactaatttgggtggatcatcatacaa |
35774369 |
T |
|
| Q |
117 |
taatttccagaagtttatcaaagaggttattgataataaagctatttgaattccaaatacaagtttag--tatggtctatgtattttgttgagatg---- |
210 |
Q |
| |
|
||||||||||||||| |||||||||||| || || |||||||||||||| | |||||||||||| ||| |||||||||| ||||||||||||||| |
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| T |
35774368 |
taatttccagaagttaatcaaagaggttcttcatcataaagctatttgagtcccaaatacaagtctagtatatggtctatatattttgttgagatgcgac |
35774269 |
T |
|
| Q |
211 |
--caacatttctgttctattacttttagctaaactatttccacttcatatttatggttttattattgtaagttcttatgattgactatatgcaatatttt |
308 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||| | || ||| |||||| ||| |||||||| ||| |||||| |||||||||| |
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| T |
35774268 |
atcgacatttctgttctattacttttagctaaactatttccacttaa----taaggtcttattaatgttagttcttaatattaactataagcaatatttt |
35774173 |
T |
|
| Q |
309 |
atggg |
313 |
Q |
| |
|
|||| |
|
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| T |
35774172 |
ctggg |
35774168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 35848262 - 35848122
Alignment:
| Q |
11 |
gaacctgtgatggaaatgatggaaggagaaaaggaagaagaattgagac-aaagtgcttggagtggaagaagaaagctaga------actaatttgaggg |
103 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | | ||||| |||||| |||| | |||| ||||||||||||||||| | ||||||||| | | |
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| T |
35848262 |
gaacttgtgatggaaatgatggaaggagaaaaaggaaaagaaatgagacaaaagagtttggtgtggaagaagaaagctacagatgctactaatttgggag |
35848163 |
T |
|
| Q |
104 |
gatcatcatacaataatttccagaagtttatcaaagaggtt |
144 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||| |
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|
| T |
35848162 |
gatcatcatacaataatttccataagttaatcaaagaggtt |
35848122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 35865934 - 35865814
Alignment:
| Q |
10 |
agaacctgtgatggaaatgatggaaggagaaaaggaagaagaattgagac-aaagtgcttggagtggaagaagaaagctaga------actaatttgagg |
102 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | | ||||| |||||| |||| | |||| ||||||||||||||||| | ||||||||| | |
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|
| T |
35865934 |
agaacttgtgatggaaatgatggaaggagaaaaaggaaaagaaatgagacaaaagagtttggtgtggaagaagaaagctacagatgctactaatttggga |
35865835 |
T |
|
| Q |
103 |
ggatcatcatacaataatttc |
123 |
Q |
| |
|
||||||||||||| ||||||| |
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|
| T |
35865834 |
ggatcatcatacattaatttc |
35865814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 540 - 602
Target Start/End: Complemental strand, 35773933 - 35773870
Alignment:
| Q |
540 |
tctttctccttttccattgatggaatcgacaattacattctaatat-caaaataacccgatgtt |
602 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||| |||||||| ||||||||| |||||| |
|
|
| T |
35773933 |
tctttctccttttgcatcgatggaatcgacaattacaatctaatataaaaaataaccagatgtt |
35773870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 1 - 141
Alignment:
| Q |
11 |
gaacctgtgatggaaatgatggaaggagaaaaggaagaagaattgagac-aaagtgcttggagtggaagaagaaagctaga------actaatttgaggg |
103 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | | ||||| |||||| |||| | |||| ||||||||||||||||| | ||||||||| | | |
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|
| T |
1 |
gaacttgtgatggaaatgatggaaggagaaaaaggaaaagaaatgagacaaaagagtttggtgtggaagaagaaagctacagatgctactaatttgggag |
100 |
T |
|
| Q |
104 |
gatcatcatacaataatttccagaagtttatcaaagaggtt |
144 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
101 |
gatcatcatacaataatttccataagttaatcaaagaggtt |
141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 478 - 551
Alignment:
| Q |
16 |
tgtgatggaaatgatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagcta |
88 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
478 |
tgtgatggaaatgatggaaggagaaaagggaaaagaaatgagacataagtgcttggaatggaagaagaaagcta |
551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 478 - 551
Alignment:
| Q |
16 |
tgtgatggaaatgatggaaggagaaaaggaagaagaattgagaca-aagtgcttggagtggaagaagaaagcta |
88 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||| ||||||| ||||||||||| |||||||||||||||| |
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|
| T |
478 |
tgtgatggaaatgatggaaggagaaaagggaaaagaaatgagacataagtgcttggaatggaagaagaaagcta |
551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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