View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19961_low_21 (Length: 238)

Name: NF19961_low_21
Description: NF19961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19961_low_21
NF19961_low_21
[»] chr7 (15 HSPs)
chr7 (18-188)||(17268460-17268627)
chr7 (18-132)||(17260762-17260874)
chr7 (167-238)||(17268642-17268713)
chr7 (18-91)||(13333030-13333103)
chr7 (167-228)||(17260957-17261018)
chr7 (18-115)||(6790033-6790128)
chr7 (18-91)||(1301985-1302058)
chr7 (18-91)||(8585280-8585353)
chr7 (18-90)||(10493949-10494021)
chr7 (18-103)||(8629053-8629136)
chr7 (18-91)||(8659884-8659957)
chr7 (18-91)||(8667940-8668013)
chr7 (18-90)||(8654971-8655043)
chr7 (18-76)||(8671219-8671277)
chr7 (18-99)||(3147793-3147874)
[»] chr2 (7 HSPs)
chr2 (18-115)||(43625931-43626028)
chr2 (18-90)||(7542747-7542819)
chr2 (51-91)||(12244980-12245020)
chr2 (19-91)||(12258155-12258227)
chr2 (18-91)||(16657091-16657164)
chr2 (22-91)||(16661566-16661635)
chr2 (53-91)||(12235245-12235283)
[»] chr4 (3 HSPs)
chr4 (18-91)||(9335465-9335538)
chr4 (18-91)||(30775773-30775846)
chr4 (51-91)||(35133000-35133040)
[»] chr6 (1 HSPs)
chr6 (52-99)||(28911137-28911184)
[»] chr5 (1 HSPs)
chr5 (18-91)||(28220472-28220545)
[»] chr1 (2 HSPs)
chr1 (19-91)||(4678132-4678204)
chr1 (18-115)||(15595557-15595653)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 17268460 - 17268627
Alignment:
Q  18 gaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatctgtcaaaatataacatcaataattatat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  17268460 gaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatctgtcaaaatataacattaataattata- 17268558  T
Q  118 actatcattcatttggtttttgaatgagtaaatacaaaattctatttggttttttaataatgaaaaataag 188  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| ||||    
T  17268559 --tatcattcatttggtttttgaatgagtaaatacaaaattctatttggtttttgataaatgaaaagtaag 17268627  T

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Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 17260762 - 17260874
Alignment:
Q  18 gaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatctgtcaaaatataacatcaataattatat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |  | ||||| |||||    
T  17260762 gaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaactagtctcttagcatctgtcaaaata--atgttaataaatatat 17260859  T
Q  118 actatcattcatttg 132  Q
    |||||||||||||||    
T  17260860 actatcattcatttg 17260874  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 17268642 - 17268713
Alignment:
Q  167 ttttttaataatgaaaaataagtacttatagtccttaaaaatttccaatatcaataaaaaatgtatgataac 238  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17268642 ttttttaataatgaaaaataagaacttatagtccttaaaaatttccaatatcaataaaaaatgtacgataac 17268713  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 13333103 - 13333030
Alignment:
Q  18 gaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatctg 91  Q
    |||||||||| |||||||||| ||||| || || |||||||||||||||||||||||||  |||||||||||||    
T  13333103 gaatggccacaacattatatcattttgaacaaccggatcactaaacttcctaccaattaacctcttagcatctg 13333030  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 17260957 - 17261018
Alignment:
Q  167 ttttttaataatgaaaaataagtacttatagtccttaaaaatttccaatatcaataaaaaat 228  Q
    |||||||||||||||| ||||| ||||||||||||||||||| || ||||||||||||||||    
T  17260957 ttttttaataatgaaatataagaacttatagtccttaaaaatctcaaatatcaataaaaaat 17261018  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 6790033 - 6790128
Alignment:
Q  18 gaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatctgtcaaaatataacatcaataattat 115  Q
    |||||||||  |||| ||||| ||||| || |||| |||||||||||||||||||||||  |||||||||||||  |||| ||||||| |||||||||    
T  6790033 gaatggccaaaacatcatatcattttgaacaacagaatcactaaacttcctaccaattaacctcttagcatctg--aaaaaataacattaataattat 6790128  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 1301985 - 1302058
Alignment:
Q  18 gaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatctg 91  Q
    |||||||||| |||| || |||||||| || || | ||||||||||||||||||||||| ||||||||||||||    
T  1301985 gaatggccacaacatcatgtctttttgaacaactgaatcactaaacttcctaccaattaatctcttagcatctg 1302058  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 8585353 - 8585280
Alignment:
Q  18 gaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatctg 91  Q
    |||||||||| |||||||||| ||||| || || |||||||||||||||||||||||||  ||||| |||||||    
T  8585353 gaatggccacaacattatatcattttgaacaacgggatcactaaacttcctaccaattaacctcttggcatctg 8585280  T

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Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 10494021 - 10493949
Alignment:
Q  18 gaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatct 90  Q
    |||||||||| |||||||||| ||||| || || ||||||||||||||||| |||||||  ||||||||||||    
T  10494021 gaatggccacaacattatatcgttttgaacaaccggatcactaaacttcctgccaattaacctcttagcatct 10493949  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 8629053 - 8629136
Alignment:
Q  18 gaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatctgtcaaaatataac 103  Q
    |||||||||  |||| ||||| ||||| || ||||||||||||||||||||||||||||  ||||| |||||||  ||||||||||    
T  8629053 gaatggccagaacatgatatccttttgaacaacaggatcactaaacttcctaccaattaacctcttggcatctg--aaaatataac 8629136  T

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Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 8659884 - 8659957
Alignment:
Q  18 gaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatctg 91  Q
    |||||||||| |||| || |||||||| || || | ||||||||||||||||||||||| |||||| |||||||    
T  8659884 gaatggccacaacatcatgtctttttgaacaactgaatcactaaacttcctaccaattaatctctttgcatctg 8659957  T

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Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 8667940 - 8668013
Alignment:
Q  18 gaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatctg 91  Q
    |||||||||| ||| ||||||| |||| || || || ||||||||||||||||||||||  |||||||||||||    
T  8667940 gaatggccacaacaatatatctctttgaacaacggggtcactaaacttcctaccaattaacctcttagcatctg 8668013  T

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Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 8654971 - 8655043
Alignment:
Q  18 gaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatct 90  Q
    |||||||||| |||| ||||| ||||| || | |||||||||| |||||||||||||||  ||||||||||||    
T  8654971 gaatggccacaacatgatatccttttgaacaataggatcactatacttcctaccaattaacctcttagcatct 8655043  T

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Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 8671277 - 8671219
Alignment:
Q  18 gaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaatta 76  Q
    |||||||||| ||| ||||||| |||| || || |||||||||||||||||||||||||    
T  8671277 gaatggccacaacaatatatctctttgaacaaccggatcactaaacttcctaccaatta 8671219  T

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Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 3147793 - 3147874
Alignment:
Q  18 gaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatctgtcaaaata 99  Q
    |||||||||| |||| ||||| ||||| || |||| ||||| |||||||||||||||||  ||||| ||||||  |||||||    
T  3147793 gaatggccacaacatcatatcattttgaacaacagaatcaccaaacttcctaccaattaacctctttgcatctaacaaaata 3147874  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 43625931 - 43626028
Alignment:
Q  18 gaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatctgtcaaaatataacatcaataattat 115  Q
    |||||||||| |||| ||||| ||||| || |||| |||||||||||||||||| ||||  |||||||||||||  |||| | ||||| |||||||||    
T  43625931 gaatggccacaacatgatatcattttgaacaacagaatcactaaacttcctaccgattaacctcttagcatctggaaaaaaaaaacataaataattat 43626028  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 7542747 - 7542819
Alignment:
Q  18 gaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatct 90  Q
    |||||||||  ||| |||||| | ||| || ||||||||||||||||||||||||||||  ||||||||||||    
T  7542747 gaatggccataacagtatatcatcttgaacaacaggatcactaaacttcctaccaattaacctcttagcatct 7542819  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 12245020 - 12244980
Alignment:
Q  51 aggatcactaaacttcctaccaattagtctcttagcatctg 91  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  12245020 aggatcactaaacttcctaccaattaatctcttagcatctg 12244980  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 12258227 - 12258155
Alignment:
Q  19 aatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatctg 91  Q
    ||||||||| |||||||||| | ||| || ||  ||||||||||||||||||||||||  |||||||||||||    
T  12258227 aatggccacaacattatatcatcttgaactacttgatcactaaacttcctaccaattaacctcttagcatctg 12258155  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 16657164 - 16657091
Alignment:
Q  18 gaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatctg 91  Q
    |||||||||| | || ||||| ||||| || ||||||||||||||||||||||| ||||  || ||||||||||    
T  16657164 gaatggccacaagatgatatcattttgaacaacaggatcactaaacttcctaccgattaaccttttagcatctg 16657091  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 16661635 - 16661566
Alignment:
Q  22 ggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatctg 91  Q
    |||||| ||| |||||||||||| || || || |||||||| |||||||||||||  |||||||||||||    
T  16661635 ggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaacctcttagcatctg 16661566  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 91
Target Start/End: Original strand, 12235245 - 12235283
Alignment:
Q  53 gatcactaaacttcctaccaattagtctcttagcatctg 91  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  12235245 gatcactaaacttcctaccaattaacctcttagcatctg 12235283  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 9335538 - 9335465
Alignment:
Q  18 gaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatctg 91  Q
    |||||||||| ||| ||||||| |||| || ||  |||||||||||||||||||| ||| ||||||||||||||    
T  9335538 gaatggccacaacaatatatctctttgaacaaccagatcactaaacttcctaccagttaatctcttagcatctg 9335465  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 30775773 - 30775846
Alignment:
Q  18 gaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatctg 91  Q
    |||||||||| |||  ||||||||||| || ||||| || ||||| |||||||||||||  || ||||||||||    
T  30775773 gaatggccacaacaaaatatctttttgaacaacagggtcgctaaatttcctaccaattaaccttttagcatctg 30775846  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 35133000 - 35133040
Alignment:
Q  51 aggatcactaaacttcctaccaattagtctcttagcatctg 91  Q
    ||||||||||||||||||||||||||  || ||||||||||    
T  35133000 aggatcactaaacttcctaccaattaaccttttagcatctg 35133040  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 28911137 - 28911184
Alignment:
Q  52 ggatcactaaacttcctaccaattagtctcttagcatctgtcaaaata 99  Q
    |||||||||||||||||| ||||||  |||||||||||||||||||||    
T  28911137 ggatcactaaacttcctatcaattatcctcttagcatctgtcaaaata 28911184  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 28220472 - 28220545
Alignment:
Q  18 gaatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatctg 91  Q
    |||||||||| || ||||||| | ||| || ||||  ||||||||||||||||||||||  |||||||||||||    
T  28220472 gaatggccacaactttatatcatcttgaacaacagagtcactaaacttcctaccaattaacctcttagcatctg 28220545  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 4678204 - 4678132
Alignment:
Q  19 aatggccacgacattatatctttttggaccacaggatcactaaacttcctaccaattagtctcttagcatctg 91  Q
    ||||||||| |||| || |||||||| || |||| ||||||| || ||||||||||||  |||||||||||||    
T  4678204 aatggccacaacatgatgtctttttgaacaacagaatcactatacctcctaccaattaacctcttagcatctg 4678132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 15595557 - 15595653
Alignment:
Q  18 gaatggccacgacattatatctttttggacca-caggatcactaaacttcctaccaattagtctcttagcatctgtcaaaatataacatcaataattat 115  Q
    |||||||||| || ||||||| ||||| || | ||| |||||||||||||||||  |||| ||||||||||||||  |||| ||||||  |||||||||    
T  15595557 gaatggccacaactttatatcattttgaacaaacagaatcactaaacttcctactgattaatctcttagcatctg--aaaaaataacaaaaataattat 15595653  T

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