View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19961_low_23 (Length: 233)
Name: NF19961_low_23
Description: NF19961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19961_low_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 7973963 - 7973764
Alignment:
| Q |
18 |
aacaatcgcaataaaccacgccggaatcacatgatcgatgtcaagctcactcatgtagagaaatccacgatccgatcgcattaaaacatagtcgtgagat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| |
|
|
| T |
7973963 |
aacaatcgcaataaaccacgccggaatcacatgatcgatgtcaagctcactcatgtagagaaatccacgatcggatcgcattaacacgtagtcgtgagat |
7973864 |
T |
|
| Q |
118 |
aatgcgaggatgtaacctgcggcggatgcatgaccggtgacggcggcgatggtaggcatgggaagagagagaagttcggagacgacggaacgaaggagat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7973863 |
aatgcgaggatgtaacctgcggcggatgcgtgaccggtgacggcggcgatggtaggcatgggaagagagagaagttcggagacgacggaacgaaggagat |
7973764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 185
Target Start/End: Original strand, 7966966 - 7967093
Alignment:
| Q |
58 |
tcaagctcactcatgtagagaaatccacgatccgatcgcattaaaacatagtcgtgagataatgcgaggatgtaacctgcggcggatgcatgaccggtga |
157 |
Q |
| |
|
|||||||| || ||||||||||| || |||| || | |||||||| ||||||||||| | ||||| ||||||||| |||| ||| || |||||||||| |
|
|
| T |
7966966 |
tcaagctcgttcttgtagagaaattcatgatcggagctcattaaaaagtagtcgtgagaaagtgcgaagatgtaaccggcggtggaggcgtgaccggtga |
7967065 |
T |
|
| Q |
158 |
cggcggcgatggtaggcatgggaagaga |
185 |
Q |
| |
|
| |||| ||||||||||| || ||||| |
|
|
| T |
7967066 |
caacggcaatggtaggcatagggagaga |
7967093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 27962868 - 27962920
Alignment:
| Q |
106 |
tagtcgtgagataatgcgaggatgtaacctgcggcggatgcatgaccggtgac |
158 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||| || || | ||||||||| |
|
|
| T |
27962868 |
tagtcgtgagataattcgaggatgtaacctacggctgaggcgttaccggtgac |
27962920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 46 - 217
Target Start/End: Complemental strand, 1068946 - 1068775
Alignment:
| Q |
46 |
acatgatcgatgtcaagctcactcatgtagagaaatccacgatccgatcgcattaaaacatagtcgtgagataatgcgaggatgtaacctgcggcggatg |
145 |
Q |
| |
|
||||||||| ||||||| || ||||||| ||||||||||||||| |||||| ||| | ||||||||||||||| |||||||||||||| || || | |
|
|
| T |
1068946 |
acatgatcgctgtcaagttcgctcatgttgagaaatccacgatctgatcgctataacatgtagtcgtgagataatccgaggatgtaacctaaggatgagg |
1068847 |
T |
|
| Q |
146 |
catgaccggtgacggcggcgatggtaggcatgggaagagagagaagttcggagacgacggaacgaaggagat |
217 |
Q |
| |
|
| | |||||||||| | ||||||| |||||||||||||||||||||| |||||||| |||||| ||||||| |
|
|
| T |
1068846 |
cgttaccggtgacgacaacgatggttggcatgggaagagagagaagtttggagacgatggaacggaggagat |
1068775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 46 - 202
Target Start/End: Original strand, 55819429 - 55819585
Alignment:
| Q |
46 |
acatgatcgatgtcaagctcactcatgtagagaaatccacgatccgatcgcattaaaacatagtcgtgagataatgcgaggatgtaacctgcggcggatg |
145 |
Q |
| |
|
||||||||| ||||||| || |||||||||||||||| |||||| |||||| ||| || ||||| ||||||||| |||||||||||||| | || || | |
|
|
| T |
55819429 |
acatgatcgctgtcaagttcgctcatgtagagaaatctacgatctgatcgctataacacgtagtcatgagataatccgaggatgtaacctactgctgagg |
55819528 |
T |
|
| Q |
146 |
catgaccggtgacggcggcgatggtaggcatgggaagagagagaagttcggagacga |
202 |
Q |
| |
|
| | |||||||||| |||||||||| || |||||| ||||||||| ||||||||||| |
|
|
| T |
55819529 |
cgttaccggtgacgacggcgatggttggtatgggaggagagagaatttcggagacga |
55819585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 14838822 - 14838770
Alignment:
| Q |
106 |
tagtcgtgagataatgcgaggatgtaacctgcggcggatgcatgaccggtgac |
158 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||| || || | ||||||||| |
|
|
| T |
14838822 |
tagtcgtgagataatccgaggatgtaacctacggctgaggcgttaccggtgac |
14838770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University