View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19961_low_24 (Length: 214)
Name: NF19961_low_24
Description: NF19961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19961_low_24 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 12869646 - 12869859
Alignment:
| Q |
1 |
agaagtttttaattattgattaatggtaatactcactgtttcttagtcttgtcttgatcttggtcatctccttctaactctgcttcgatttttgaaagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12869646 |
agaagtttttaattattgattaatggtaatactcactgtttcttagtcttgtcttgatcttggtcatctccttctaactctgcttcgatttttgaaagtt |
12869745 |
T |
|
| Q |
101 |
tacttctatgctgttctaaggtgttgttaactgtggcttcattagacgacgaagatatcgaagaagaattcggtgacaccggaatgttaaacacctccga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
12869746 |
tacttctatgctgttctaaggtgttgttaactgtggcttcattagacgacgaagatatcgaagaagaattcggtgacaccggagtgttaaacacctcgga |
12869845 |
T |
|
| Q |
201 |
tgagtccgggatgt |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
12869846 |
tgagtccgggatgt |
12869859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University