View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19961_low_3 (Length: 689)

Name: NF19961_low_3
Description: NF19961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19961_low_3
NF19961_low_3
[»] chr3 (7 HSPs)
chr3 (19-677)||(22808205-22808864)
chr3 (540-640)||(7657967-7658067)
chr3 (540-647)||(2033465-2033572)
chr3 (540-640)||(11404269-11404369)
chr3 (535-594)||(32012965-32013024)
chr3 (574-646)||(17369778-17369851)
chr3 (572-640)||(28733849-28733916)
[»] chr1 (5 HSPs)
chr1 (56-666)||(9752221-9752834)
chr1 (533-650)||(34028581-34028696)
chr1 (541-640)||(43577987-43578085)
chr1 (540-628)||(20997110-20997198)
chr1 (540-628)||(22052350-22052438)
[»] chr6 (2 HSPs)
chr6 (398-627)||(13503256-13503487)
chr6 (172-308)||(13503089-13503222)
[»] chr5 (3 HSPs)
chr5 (541-640)||(33930629-33930727)
chr5 (533-588)||(34476561-34476616)
chr5 (540-595)||(29318268-29318323)
[»] chr4 (4 HSPs)
chr4 (541-640)||(16918793-16918891)
chr4 (540-628)||(43236151-43236239)
chr4 (540-599)||(14627194-14627253)
chr4 (542-601)||(19099102-19099161)
[»] scaffold0039 (1 HSPs)
scaffold0039 (540-640)||(33625-33725)
[»] chr7 (1 HSPs)
chr7 (540-647)||(18271800-18271907)
[»] scaffold0401 (2 HSPs)
scaffold0401 (540-595)||(11954-12009)
scaffold0401 (540-595)||(16102-16157)
[»] scaffold0005 (1 HSPs)
scaffold0005 (540-599)||(190130-190189)
[»] chr8 (2 HSPs)
chr8 (540-595)||(15183468-15183523)
chr8 (549-599)||(18925473-18925523)


Alignment Details
Target: chr3 (Bit Score: 555; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 19 - 677
Target Start/End: Complemental strand, 22808864 - 22808205
Alignment:
Q  19 aacatttctgagttcttaattcttaaatccttccatttcagaattaatcctcctagagcaaacatcatcaagtaagtcttatggaagcctcccatcctca 118  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  22808864 aacatgtctgagttcttaat-cttaaatccttccatttcagaattaatcctcctagagcaaacatcatcaaggaagtcttatgaaagcctcccatcctca 22808766  T
Q  119 attggatcaagtgcaattgtgatggagcttctgctggaaatttagcttgt----ggggaattttcagaaacaaagatgcgctttttcttggaggctttgc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |    ||||||||||||||||||||||||||||||||||||||||||||||    
T  22808765 attggatcaagtgcaattgtgatggagcttctgctggaaatttagcttcttgtgggggaattttcagaaacaaagatgcgctttttcttggaggctttgc 22808666  T
Q  215 tgaaggccctggtttaggaaactcttactttgcagaactatgtgatgcaatgagatctattgaagtggccagatatcaaaaaactggagaaacttttggt 314  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||| |||||| ||||||    
T  22808665 tgaaggccttggtttaggaaactcttactttgcagaactatgtggtgcaatgagatctattgaagtggccagat--caaaaaactgaagaaacctttggt 22808568  T
Q  315 tggaatcagactctatgttgtttgttagagccttcaatgatgctagacttgttccttggagagtaagaaatagatggtccaactgtctttccattgtttc 414  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  22808567 tggaatcagactctatgttggttgttagagccttcaatgatgctagacttgttccttggagagtcagaaatagatggtccaactgcctttccattgtttc 22808468  T
Q  415 ctcttttaattttgtagtttctcatgtttatagagaaggaaatacctgtgcagatgctttagctaacataggattaagcttgaacacttttgtttattgt 514  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  22808467 ctcttttaattttgtagtttctcatgtttgtagagaaggaaatacctgtgcagatgctttagctaacataggattaagcttgaacacttttgtttattat 22808368  T
Q  515 agcactattccattgaatgttaggggtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcc 614  Q
    ||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22808367 agcactattccattggatgttaggggttattatgttaaaaataggcttggttgacctaattttaggtttactcactcttgagaaggtcttcgtttggtcc 22808268  T
Q  615 cccttctccttttttgtaacaatcttcttttggtatggattttgtgttttgtggctctctgct 677  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22808267 cccttctccttttttgtaacaatcttcttttggtatggattttgtgttttgtagctctctgct 22808205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 640
Target Start/End: Original strand, 7657967 - 7658067
Alignment:
Q  540 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttttgtaacaatct 639  Q
    |||||||||||||||||| | | ||||| |||||||||||||||| |||||||||||||| | || || | ||||||||||||  |||||||| ||||||    
T  7657967 gtgattatgttaaaaataggttaggttggcctaattttaggtttaatcactcttgagaaggttttggtattgtcccccttctctctttttgtatcaatct 7658066  T
Q  640 t 640  Q
    |    
T  7658067 t 7658067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 540 - 647
Target Start/End: Complemental strand, 2033572 - 2033465
Alignment:
Q  540 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttttgtaacaatct 639  Q
    |||||||| ||||||||| ||| ||||| |||||||||||||||| |||||||||||||| | || || | ||||||||||||  |||||||| | ||||    
T  2033572 gtgattatattaaaaataggctaggttggcctaattttaggtttaatcactcttgagaaggttttggtatagtcccccttctctctttttgtatctatct 2033473  T
Q  640 tcttttgg 647  Q
    | ||||||    
T  2033472 ttttttgg 2033465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 540 - 640
Target Start/End: Original strand, 11404269 - 11404369
Alignment:
Q  540 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttttgtaacaatct 639  Q
    ||||||||||||||||||   | ||||| |||||||||||||||| |||||||||||||| | || || |  |||||||||||  |||||||| ||||||    
T  11404269 gtgattatgttaaaaatagaataggttggcctaattttaggtttaatcactcttgagaaggttttggtataatcccccttctctctttttgtatcaatct 11404368  T
Q  640 t 640  Q
    |    
T  11404369 t 11404369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 535 - 594
Target Start/End: Original strand, 32012965 - 32013024
Alignment:
Q  535 taggggtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttg 594  Q
    |||| |||||||||||||||||| | ||||||| | |||||||||||||| |||||||||    
T  32012965 taggagtgattatgttaaaaatagggttggttggcgtaattttaggtttaatcactcttg 32013024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 574 - 646
Target Start/End: Complemental strand, 17369851 - 17369778
Alignment:
Q  574 ttttaggtttactcactcttgagaagatcttcgtttggtcccccttctc-cttttttgtaacaatcttcttttg 646  Q
    ||||||||||| |||| | ||||||| | || |||||||||||||||||  |||||| |||||||||| |||||    
T  17369851 ttttaggtttaatcacccctgagaaggttttggtttggtcccccttctcttttttttttaacaatctttttttg 17369778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 572 - 640
Target Start/End: Original strand, 28733849 - 28733916
Alignment:
Q  572 aattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttttgtaacaatctt 640  Q
    ||||||||||||| |||||||||||||| | || |  | ||||||||||| |||||||||| |||||||    
T  28733849 aattttaggtttaatcactcttgagaaggtattggcctagtcccccttct-cttttttgtatcaatctt 28733916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 180; Significance: 8e-97; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 56 - 666
Target Start/End: Original strand, 9752221 - 9752834
Alignment:
Q  56 tcagaattaatcctcctagagcaaacatcatcaagtaagtcttatggaagcctcccatcctcaattggatcaagtgcaattgtgatggagcttctgctgg 155  Q
    |||||||||| ||||| ||| ||||||| |||||| ||||  | ||||| |||||||| ||||||||||| || || |||| |||||| ||||||||  |    
T  9752221 tcagaattaaccctcccagaacaaacattatcaaggaagtaatttggaaacctcccattctcaattggattaaatgtaattttgatggtgcttctgcaag 9752320  T
Q  156 aaatttagcttgt----ggggaattttcagaa-acaaagatgcgctttttcttggaggctttgctgaaggccctggtttaggaaactcttactttgcaga 250  Q
     ||  |||||| |    ||||||||||||||  | ||| |||| |||||||| || |  |||| |||||||| |||| | ||||||||||| ||||| ||    
T  9752321 gaacatagcttcttgtgggggaattttcagaggaaaaaaatgccctttttctgggtgattttgttgaaggccttggtcttggaaactcttattttgctga 9752420  T
Q  251 actatgtgatgcaatgagatctattgaagtggccagatatcaaaaaactggagaaacttttggttggaatcagactctatgttgtttgttagagccttca 350  Q
     |  ||||  || || ||||| |||||  ||||   |||  ||||||||| || ||  ||||||||||||  || || |||||| |||||||||||||||    
T  9752421 gccttgtggagctataagatccattgatttggcagcata--aaaaaactgaagtaatctttggttggaatttgattccatgttggttgttagagccttca 9752518  T
Q  351 atgatgctagacttgttccttggagagtaagaaatagatggtccaactgtctttccattgtttcctcttttaattttgtagtttctcatgtttatagaga 450  Q
    |  ||||||| ||||||||||||||  ||||||| |||||||| || |||||||| |||||||||||||| | |||||| |||||||||||  |||||||    
T  9752519 agaatgctagtcttgttccttggaggataagaaacagatggtctaattgtctttctattgtttcctctttgagttttgttgtttctcatgtgcatagaga 9752618  T
Q  451 aggaaatacctgtgcagatgctttagctaacataggattaagcttgaacacttttgtttattgtagcactattccattgaatgttaggggtgattatgtt 550  Q
    |||||||||||||||||||||||| ||||||||||| |||||  | |||||||| ||||||| |||   |||||||||| | |||| |  ||||||||||    
T  9752619 aggaaatacctgtgcagatgctttggctaacatagggttaagtgtaaacactttcgtttattttagtgttattccattggaggttaagactgattatgtt 9752718  T
Q  551 aaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttttgtaacaatcttcttttggtat 650  Q
    |||| || ||||||||| |||||||||||||||| | | |||||||||| |||| | |||| ||||||||| |||||||||||||||||||||||| |||    
T  9752719 aaaattaggcttggttggcctaattttaggtttaattaatcttgagaaggtcttggcttggccccccttcttcttttttgtaacaatcttcttttgatat 9752818  T
Q  651 ggattttgtgttttgt 666  Q
    ||| ||||||| ||||    
T  9752819 ggaatttgtgtgttgt 9752834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 533 - 650
Target Start/End: Complemental strand, 34028696 - 34028581
Alignment:
Q  533 gttaggggtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttttgta 632  Q
    |||||| |||||||||||||||||| | ||||||| |||||||||||||||| ||||| |||||||| |  | |||||||||||| ||| ||||||||||    
T  34028696 gttaggagtgattatgttaaaaataggtttggttggcctaattttaggtttaatcactattgagaaggttatggtttggtcccccatct-cttttttgta 34028598  T
Q  633 acaatcttcttttggtat 650  Q
    |||||||| |||||||||    
T  34028597 acaatctt-ttttggtat 34028581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 541 - 640
Target Start/End: Original strand, 43577987 - 43578085
Alignment:
Q  541 tgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttttgtaacaatctt 640  Q
    ||||||||||||||||| ||| ||||| |||||||||||||||| |||||||||||||| | || || | ||||||||||||  |||||||| |||||||    
T  43577987 tgattatgttaaaaataggctaggttggcctaattttaggtttaatcactcttgagaaggt-ttggtatagtcccccttctctctttttgtatcaatctt 43578085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 540 - 628
Target Start/End: Original strand, 20997110 - 20997198
Alignment:
Q  540 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttt 628  Q
    |||||||||||||||||| |||||| || |||||||||||||||| |||||||||||||| | || || | | ||||||||| ||||||    
T  20997110 gtgattatgttaaaaataggcttgggtggcctaattttaggtttaatcactcttgagaaggttttggtatagccccccttcttcttttt 20997198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 540 - 628
Target Start/End: Original strand, 22052350 - 22052438
Alignment:
Q  540 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttt 628  Q
    |||||||||||||||||| |||||| || |||||||||||| ||| |||||||||||||| | || || | |||||| |||| ||||||    
T  22052350 gtgattatgttaaaaataggcttgggtggcctaattttaggcttaatcactcttgagaaggttttggtatagtccccattcttcttttt 22052438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 398 - 627
Target Start/End: Original strand, 13503256 - 13503487
Alignment:
Q  398 tgtctttccattgtttcctcttttaattttgtagtttctcatgtttatagagaaggaaatacctgtgcagatgctttagctaacataggattaagcttga 497  Q
    |||||||| ||| |||||||| | |||||||| || ||| |||| ||| ||||||||||||| |||   |||||||||| ||| ||||| ||||| ||||    
T  13503256 tgtctttctattatttcctctatgaattttgttgtctcttatgtatatggagaaggaaatacttgtattgatgctttagttaatataggtttaagtttga 13503355  T
Q  498 acacttttgtttattgtagcactattccattgaatgttaggggtgattatgttaaaaataagcttggttgacctaattttaggtttact--cactcttga 595  Q
    |||| ||| |||||| | ||||||||| |||  | |||||  |||||||||||||||||| | |||||||  |||||||| ||||||||  |||||||||    
T  13503356 acacctttttttattattgcactattcaattacaagttagaagtgattatgttaaaaataggtttggttggtctaatttttggtttactcacactcttga 13503455  T
Q  596 gaagatcttcgtttggtcccccttctcctttt 627  Q
    |||| ||||  |||||||| |||||| |||||    
T  13503456 gaaggtcttgatttggtcctccttcttctttt 13503487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 172 - 308
Target Start/End: Original strand, 13503089 - 13503222
Alignment:
Q  172 gaattttcagaaacaaagatgcgctttttcttggaggctttgctgaaggccctggtttaggaaactcttactttgcagaactatgtgatgcaatgagatc 271  Q
    ||||||||| ||||||||| ||  |||||||||| || |||  |||||||| |||| | || || | | ||| |||||| || |||| |||||||| |||    
T  13503089 gaattttcataaacaaagaagctatttttcttgggggttttagtgaaggccttggtcttgggaattat-actctgcagagctttgtggtgcaatgaaatc 13503187  T
Q  272 tattgaagtggccagatatcaaaaaactggagaaact 308  Q
    ||||||||||| ||||| ||||||||||||| |||||    
T  13503188 tattgaagtgg-cagat-tcaaaaaactggaaaaact 13503222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 541 - 640
Target Start/End: Complemental strand, 33930727 - 33930629
Alignment:
Q  541 tgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttttgtaacaatctt 640  Q
    ||||||||||||||||| ||| ||||| |||||||||||||||| |||||||||||||| | || || | ||||||||||||  |||||||| |||||||    
T  33930727 tgattatgttaaaaataggctaggttggcctaattttaggtttaatcactcttgagaaggt-ttggtatagtcccccttctctctttttgtatcaatctt 33930629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 533 - 588
Target Start/End: Original strand, 34476561 - 34476616
Alignment:
Q  533 gttaggggtgattatgttaaaaataagcttggttgacctaattttaggtttactca 588  Q
    |||||| ||||||||| ||||| |||| ||||||||||||||||||||||||||||    
T  34476561 gttaggagtgattatgataaaagtaagattggttgacctaattttaggtttactca 34476616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 540 - 595
Target Start/End: Original strand, 29318268 - 29318323
Alignment:
Q  540 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttga 595  Q
    |||||||||||||||||| |||||| || |||| ||||||||||| ||||||||||    
T  29318268 gtgattatgttaaaaataggcttgggtggcctagttttaggtttaatcactcttga 29318323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 541 - 640
Target Start/End: Complemental strand, 16918891 - 16918793
Alignment:
Q  541 tgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttttgtaacaatctt 640  Q
    ||||||||||||||||| ||| ||||| |||||||||||||||| |||||||||||||| | || || | ||||||||||||  |||||||| |||||||    
T  16918891 tgattatgttaaaaataggctaggttggcctaattttaggtttaatcactcttgagaaggt-ttggtatagtcccccttctctctttttgtatcaatctt 16918793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 540 - 628
Target Start/End: Original strand, 43236151 - 43236239
Alignment:
Q  540 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttt 628  Q
    |||||||||||||||||| |||||| || |||||||||||||||| |||||||||||||| | || || | |||| |||||| ||||||    
T  43236151 gtgattatgttaaaaataggcttgggtggcctaattttaggtttaatcactcttgagaaggttttggtatagtcctccttcttcttttt 43236239  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 540 - 599
Target Start/End: Complemental strand, 14627253 - 14627194
Alignment:
Q  540 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaag 599  Q
    |||||||||||||||||| ||| || || |||| ||||||||||| ||||||||||||||    
T  14627253 gtgattatgttaaaaataggctaggatggcctacttttaggtttaatcactcttgagaag 14627194  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 542 - 601
Target Start/End: Complemental strand, 19099161 - 19099102
Alignment:
Q  542 gattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagat 601  Q
    |||||||||||||||||||| |||||  |||||||||||| || ||| ||||||||||||    
T  19099161 gattatgttaaaaataagctcggttggtctaattttaggtgtaatcattcttgagaagat 19099102  T

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Target: scaffold0039 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 540 - 640
Target Start/End: Complemental strand, 33725 - 33625
Alignment:
Q  540 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttttgtaacaatct 639  Q
    ||||||||| |||||||| |||  |||| |||| ||||||||||| |||| | ||||||| | || ||||| ||||||||||| ||||||||||||||||    
T  33725 gtgattatgataaaaataggctaagttggcctagttttaggtttaatcacccctgagaaggttttggtttgctcccccttctctttttttgtaacaatct 33626  T
Q  640 t 640  Q
    |    
T  33625 t 33625  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 540 - 647
Target Start/End: Complemental strand, 18271907 - 18271800
Alignment:
Q  540 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaagatcttcgtttggtcccccttctccttttttgtaacaatct 639  Q
    |||||||| ||||||||| ||| ||||| |||||||||||||||| |||||||||||||| | || || |  |||||||||||  |||||||| | ||||    
T  18271907 gtgattatattaaaaataggctaggttggcctaattttaggtttaatcactcttgagaaggttttggtataatcccccttctctctttttgtatctatct 18271808  T
Q  640 tcttttgg 647  Q
    | ||||||    
T  18271807 ttttttgg 18271800  T

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Target: scaffold0401 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 540 - 595
Target Start/End: Complemental strand, 12009 - 11954
Alignment:
Q  540 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttga 595  Q
    |||||||||||||||||| |||||| || |||| ||||||||||| ||||||||||    
T  12009 gtgattatgttaaaaataggcttgggtggcctagttttaggtttaatcactcttga 11954  T

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Target: scaffold0401; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 540 - 595
Target Start/End: Complemental strand, 16157 - 16102
Alignment:
Q  540 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttga 595  Q
    |||||||||||||||||| |||||| || |||| ||||||||||| ||||||||||    
T  16157 gtgattatgttaaaaataggcttgggtggcctagttttaggtttaatcactcttga 16102  T

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Target: scaffold0005 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 540 - 599
Target Start/End: Original strand, 190130 - 190189
Alignment:
Q  540 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttgagaag 599  Q
    |||||||||||||||||| ||| || || |||| ||||||||||| ||||||||||||||    
T  190130 gtgattatgttaaaaataggctaggatggcctacttttaggtttaatcactcttgagaag 190189  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 540 - 595
Target Start/End: Original strand, 15183468 - 15183523
Alignment:
Q  540 gtgattatgttaaaaataagcttggttgacctaattttaggtttactcactcttga 595  Q
    |||||||||||||||||| |||||| || |||| ||||||||||| ||||||||||    
T  15183468 gtgattatgttaaaaataggcttgggtggcctagttttaggtttaatcactcttga 15183523  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 549 - 599
Target Start/End: Original strand, 18925473 - 18925523
Alignment:
Q  549 ttaaaaataagcttggttgacctaattttaggtttactcactcttgagaag 599  Q
    |||||||||  |||||||| |||||||||||||| |||||| |||||||||    
T  18925473 ttaaaaatagacttggttggcctaattttaggttaactcacacttgagaag 18925523  T

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