View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19961_low_7 (Length: 449)
Name: NF19961_low_7
Description: NF19961
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19961_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 5 - 440
Target Start/End: Original strand, 42975668 - 42976103
Alignment:
| Q |
5 |
ttacgactccattacctgttttctggtcaccaaaattctgcatgtctgttgttttattacaatacgaaaagccaacaccagcaggagactcgaggaacaa |
104 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42975668 |
ttacgactacattacctgttttctggtcaccaaaattctgcatgtctgttgttttattacaataagaaaagccaacaccagcaggagactcgaggaacag |
42975767 |
T |
|
| Q |
105 |
tatgtttgccactgcaacatccaaaataataaacattagtaccggtattttttagttcgatgaatcgaagcaacgagggttgaatttcattatacgagaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42975768 |
tatgtttgccactgcaacatccaaaataataaacattagtaccggtattttttagttcgatgaatcgaagcaacaagggttgaatttcattatacgagaa |
42975867 |
T |
|
| Q |
205 |
ttcaacttacaattgttccaagcataaggattcaagtaaagtgacttgccatcaggcctaatgcgaaaaggaccaatttcttccgaagcaccataagcaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42975868 |
ttcaacttacaattgttccaagcataaggattcaagtaaagtgacttgccatcaggcctaatgcgaaaaggaccaatttcttccgaagcaccataagcaa |
42975967 |
T |
|
| Q |
305 |
tggaagaacaaccaggaccaccattaagccataaaactagtggctttgaattgggtccatgactcagtggtgcttcagtcaaccagtaaaacaatgctct |
404 |
Q |
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| T |
42975968 |
tggaagaacaaccaggaccaccattaagccataaaactagtggctttgaattgggtccatgactcagtggtgcttcagtcaaccagtaaaacaatgctct |
42976067 |
T |
|
| Q |
405 |
tccactctcctcattcacagtcacataacctgaata |
440 |
Q |
| |
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| T |
42976068 |
tccactctcctcattcacagtcacataacctgaata |
42976103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 209 - 440
Target Start/End: Original strand, 42981769 - 42982000
Alignment:
| Q |
209 |
acttacaattgttccaagcataaggattcaagtaaagtgacttgccatcaggcctaatgcgaaaaggaccaatttcttccgaagcaccataagcaatgga |
308 |
Q |
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||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |
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| T |
42981769 |
acttacaattgttccaagcataacgattcaagaaaagtgatttgccatcaggcctaatacgaaaaggaccaatttcttcagaagcaccataagcaataga |
42981868 |
T |
|
| Q |
309 |
agaacaaccaggaccaccattaagccataaaactagtggctttgaattgggtccatgactcagtggtgcttcagtcaaccagtaaaacaatgctcttcca |
408 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | |||||||||||||| | ||||||||||||| ||| |||||| |
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| T |
42981869 |
agaacaaccaggaccaccattaagccataaaactaatggccttgaattgggtccacggttcagtggtgcttcaattaaccagtaaaacagtgcccttcca |
42981968 |
T |
|
| Q |
409 |
ctctcctcattcacagtcacataacctgaata |
440 |
Q |
| |
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|||| ||||||||||||||||| |||||||| |
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| T |
42981969 |
ctctgttcattcacagtcacatagcctgaata |
42982000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 42981594 - 42981717
Alignment:
| Q |
14 |
cattacctgttttctggtcaccaaaattctgcatgtctgttgttttattacaatacgaaaagccaacaccagcaggagactcgaggaacaatatgtttgc |
113 |
Q |
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||||||||||||||||||||||||| | | || |||||||||||||||||||| ||||| ||||||||||||||||| || ||||||| ||| ||||| |
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| T |
42981594 |
cattacctgttttctggtcaccaaatgtgtacagatctgttgttttattacaataagaaaaaccaacaccagcaggagaatcaaggaacagtatatttgc |
42981693 |
T |
|
| Q |
114 |
cactgcaacatccaaaataataaa |
137 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
42981694 |
cactgcaacatccaaaataataaa |
42981717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 269 - 354
Target Start/End: Complemental strand, 26633875 - 26633790
Alignment:
| Q |
269 |
gaaaaggaccaatttcttccgaagcaccataagcaatggaagaacaaccaggaccaccattaagccataaaactagtggctttgaa |
354 |
Q |
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| T |
26633875 |
gaaaaggaccaatttcctcagcttcaccataagcaatagaagaacaaccaggaccaccattgagccacaaaagaagtggctttgaa |
26633790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 354
Target Start/End: Complemental strand, 26626314 - 26626229
Alignment:
| Q |
269 |
gaaaaggaccaatttcttccgaagcaccataagcaatggaagaacaaccaggaccaccattaagccataaaactagtggctttgaa |
354 |
Q |
| |
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||||||| ||||||||||| | ||||| ||||||| ||||||||||||||||||||||| ||||| |||| |||||| ||||| |
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| T |
26626314 |
gaaaagggccaatttcttcagcttcaccaaaagcaatagaagaacaaccaggaccaccattgagccacaaaagaagtggcattgaa |
26626229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 350
Target Start/End: Complemental strand, 26641340 - 26641259
Alignment:
| Q |
269 |
gaaaaggaccaatttcttccgaagcaccataagcaatggaagaacaaccaggaccaccattaagccataaaactagtggctt |
350 |
Q |
| |
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| T |
26641340 |
gaaaaggaccaatttcctcagcttcaccataagcaatagaagaacaaccaggaccaccattgaaccacaaaagaagtggctt |
26641259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 340
Target Start/End: Complemental strand, 34253903 - 34253832
Alignment:
| Q |
269 |
gaaaaggaccaatttcttccgaagcaccataagcaatggaagaacaaccaggaccaccattaagccataaaa |
340 |
Q |
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|||||||||||||||| || | ||||||||||||| || |||||||||||||||||||| | |||||||| |
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| T |
34253903 |
gaaaaggaccaatttcctcagcctcaccataagcaatagatgaacaaccaggaccaccattgaaccataaaa |
34253832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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