View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19962_low_1 (Length: 867)
Name: NF19962_low_1
Description: NF19962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19962_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 303 - 856
Target Start/End: Complemental strand, 28139856 - 28139294
Alignment:
| Q |
303 |
gaaaggagttgatcaattatcatgacatcttcataaaagtcaatgaatacattta---------taaaataaaagtcaatgaatagtatattctg--tta |
391 |
Q |
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| T |
28139856 |
gaaaggagttgatcaattatcatgacatcttcataaaagtcaatgaatacatttaaaaaataaataaaataaaagtcaatgaatagtatattctgaatta |
28139757 |
T |
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| Q |
392 |
atttcacttaataagaacctgtataaatcagtttattttgaagaatagagttttatttaaaaattactattannnnnnnnaagggaaaaattattatttt |
491 |
Q |
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| T |
28139756 |
atttcacttaataagaacttgtataaatcagtttattttgaagaatagagttttatttaaaaattactattattttttttaagggaaaaattaatatttt |
28139657 |
T |
|
| Q |
492 |
gttagtcatgttttctctaacaaatatatgtccgaaacaattgatcagtatgcatagtcaacatcagattatactgtggatcaccttgatagatggtcta |
591 |
Q |
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| T |
28139656 |
gttagtcatgttttctctaacaaatatatgtccaaaacaattgatcagtgtgcatagtcaacatcagattatactgtggatcaccttgatagatggtcta |
28139557 |
T |
|
| Q |
592 |
caatgtatgtcgacactttaaaaagtagaagttcacaatcatacttatcattatacaagtgagatagtgactagatatttgacaaaatcaaaagaaaatg |
691 |
Q |
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| T |
28139556 |
caatgtatgtcgacactttaaaaagtagaagttcacaatcatacttatctttatacaagtgagatagtgacttgatatttgacaaaatcaaaagaaaatg |
28139457 |
T |
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| Q |
692 |
agagtttgttgagttgagtcactcannnnnnnnnnncaaaaattgacaacaattatgttaccacgtcactcgttagaatgatgctgatcgtgaacttctt |
791 |
Q |
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| T |
28139456 |
agagtttgttgagttgagtcactcatttttttttt--aaaaattgacaacaattatgttaccacgtcactcgttagaatgatgctgatcatgaacttctt |
28139359 |
T |
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| Q |
792 |
cttccaaaatataccttgagtacattttaagtgttagtctatggcggacacctatcaaaatgatg |
856 |
Q |
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| T |
28139358 |
cttccaaaatataccttgagtacattttaagtgttagtctatggtggacacctatcaaaatgatg |
28139294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 28139940 - 28139895
Alignment:
| Q |
14 |
agtttactcatgttctctacaatctctctcctgcaggttctctttt |
59 |
Q |
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| T |
28139940 |
agtttactcatgttctctacaatctctctcctgcaggttctctttt |
28139895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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