View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19962_low_2 (Length: 386)
Name: NF19962_low_2
Description: NF19962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19962_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 29 - 217
Target Start/End: Complemental strand, 51118746 - 51118558
Alignment:
| Q |
29 |
acagcattcaccaaaacaataacaaaaaacagaattgaatgctttaagatgagttggtaaaatgattggagtagcagatatcaaatgtagaatctcaacc |
128 |
Q |
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| T |
51118746 |
acagcattcatcaaaacaataacaaaaaacagaattgaatgctttaagatgagttggtaaaatgattggagtagcagatatcaaatgtagaatctcaacc |
51118647 |
T |
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| Q |
129 |
ttaacttgaagcaattttctaaatctaaaattattgactatgcttttgtaaatagatacaaaatttgaaatcttatcaactatgaagct |
217 |
Q |
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| T |
51118646 |
ttaacttgaagcaattttctaaatctaaaattattgactatgcttttgtaaatagatacaaaatttgaaatcttaccaactatgaagct |
51118558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 279 - 369
Target Start/End: Complemental strand, 51118533 - 51118442
Alignment:
| Q |
279 |
tttgcacttcaacagatgatacaa-tcccaaacaactaaatatcgctcaaataaatagttataaacttgaaaatatttgtcgagtactcaat |
369 |
Q |
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| T |
51118533 |
tttgcacttcaacagatgatacaaatcccaaacaactaaatatcgctcaaataaatagttataaacttgaaaatatttgtcgagtactcaat |
51118442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 51111804 - 51111708
Alignment:
| Q |
52 |
aaaaaacagaattgaatgctttaagatgagttggtaaaatgattggagtagcagatatcaaatgtagaatctcaaccttaacttgaagcaattttct |
148 |
Q |
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| T |
51111804 |
aaaaaacagaattgaatgctttaaaatgagttggggaaatgactggagtagcaaatatcaaatgtagactctcaaccttaatttgaagcagttttct |
51111708 |
T |
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