View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19964_high_1 (Length: 644)

Name: NF19964_high_1
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19964_high_1
NF19964_high_1
[»] chr7 (9 HSPs)
chr7 (9-628)||(30302051-30302667)
chr7 (9-301)||(30289674-30289983)
chr7 (27-196)||(30297277-30297460)
chr7 (143-189)||(30313326-30313372)
chr7 (54-186)||(30284822-30284969)
chr7 (54-121)||(30313409-30313476)
chr7 (208-257)||(30313271-30313323)
chr7 (339-384)||(30297098-30297143)
chr7 (339-383)||(30289605-30289649)
[»] chr1 (2 HSPs)
chr1 (150-184)||(46807603-46807637)
chr1 (557-593)||(34140888-34140924)
[»] chr8 (1 HSPs)
chr8 (552-601)||(31305943-31305992)


Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 9 - 628
Target Start/End: Complemental strand, 30302667 - 30302051
Alignment:
Q  9 agggcactatttataactatagaaatggcatctatatggttaatttgcaccaacatttggctatggtgagacatgcatgttgacgtgtgttgaaatgatc 108  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30302667 agggtactatttataactatagaaatggtatctatatgattaatttgcaccaacatttggctatggtgagacatgcattttgacgtgtgttgaaatgatc 30302568  T
Q  109 aaaattgaggtggaaccatggtactgaacttgggtggtggcgttttgtttgaatttgatgaacctggacattcttttgtatgagggggagctttatagta 208  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30302567 aaaattgaggtggaaccatggtactgaacttgggtggtggagttttgtttgaatttgatgaacctggacattcttttgtatgagggggagctttatagta 30302468  T
Q  209 tatacagtatttgtcttcatcactcaccaatggttgaattttcgatccttcctatgaaatattgaagtaactagagaatgctagtagtattataatgact 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30302467 tatacagtatttgtcttcatcactcaccaatggttgaattttcgatccttcctatgaaatattgaagtaactagagaatgctagtagtattataatgact 30302368  T
Q  309 aatgagagaacnnnnnnnnnnnnnnnnnnncataattacgatcgaacaaattattgtaacattagctgatgagtgttggcaaatggccaattatctcccg 408  Q
    |||||||||||                   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30302367 aatgagagaacgaagaaaagaaaaagaaaacataattacgatcgaacaaattattgtaacattagctgatgagtgttggcaaatggccaattatctcccg 30302268  T
Q  409 aaaataacaagggggtttcaaatggannnnnnnnnnctttcttccttatatatttgtctcaagttctattttggttcggtac-nnnnnnnngatggaatc 507  Q
    ||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||          ||||||||    
T  30302267 aaaataacaagggggtttcaaatggattttttttttctttcttccttatatatttgtctcaagttctattttggttcggtacaaaaaaaaacatggaatc 30302168  T
Q  508 tttcatagttctagagaaataaaacacaaaaatttgtcatttaattagtctttgtttgcgagtttgtaggtgaatgaaggggagggtttagaagnnnnnn 607  Q
     ||||||||||| |||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||| ||||||||||||||          
T  30302167 cttcatagttctcgagaaataaaacacaaaaatttgtcat----ttagtctttgtttgcgagtttgtaggtgaatgaagaggagggtttagaagaaaaaa 30302072  T
Q  608 nntgaaagattaagtggaaga 628  Q
      |||||||||||||||||||    
T  30302071 aatgaaagattaagtggaaga 30302051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 9 - 301
Target Start/End: Complemental strand, 30289983 - 30289674
Alignment:
Q  9 agggcactatttataactatagaaatggcatctatatggttaatttgcaccaacatttggctatggtgagacatgcatgttgacgtgtgttgaaatgatc 108  Q
    |||| |||||||||| || ||||||||| | ||||||| ||| |||||||||||||||||| |||||| ||||||||| ||||||||||||||||||| |    
T  30289983 agggtactatttatagctttagaaatggtagctatatgatta-tttgcaccaacatttggccatggtgtgacatgcattttgacgtgtgttgaaatgaac 30289885  T
Q  109 aaaattgaggtgg--------------aaccatggtactgaacttgggtggtggcgttttgtttgaatttgatgaacctggacattcttttgtatgaggg 194  Q
    ||||||||| |||              ||||||||| |||||| ||| |||||| |||||||||||||||||||||||| ||||||||||||||| ||||    
T  30289884 aaaattgagttggcaaaaatgaaatggaaccatggttctgaacctggttggtggagttttgtttgaatttgatgaacctagacattcttttgtataaggg 30289785  T
Q  195 ggagctttatagtatatacagtatttgtcttcatcactcaccaatggttgaattttcgatcct--tcctatgaaatattgaagtaact--agagaatgct 290  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| || ||  ||||||||| |||| ||||||||  ||||||||||    
T  30289784 ggagctttatagtatatacagtacttgttttcatcactcaccaatggttgaattttccattctggtcctatgaattattcaagtaactacagagaatgct 30289685  T
Q  291 agtagtattat 301  Q
    || | ||||||    
T  30289684 agcattattat 30289674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 30297460 - 30297277
Alignment:
Q  27 atagaaatggcatctatatggttaatttgcaccaacatttggctatggtgagacatgcatgttgacgtgtgttgaaatgatcaaaattgaggtgg----- 121  Q
    |||||||||| | ||||||| ||||  ||||| |||||||||| ||  || | ||||||| |||||||||||||||| || ||||||||||||||         
T  30297460 atagaaatggtagctatatgattaacatgcacaaacatttggccattttgtggcatgcattttgacgtgtgttgaaaggaacaaaattgaggtggcgaaa 30297361  T
Q  122 ---------aaccatggtactgaacttgggtggtggcgttttgtttgaatttgatgaacctggacattcttttgtatgaggggg 196  Q
             ||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  30297360 atgaaaaggaaccatggttctgaactttggtggtggagttttgtttgaatttgatgaacctggacattattttggatgaggggg 30297277  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 30313372 - 30313326
Alignment:
Q  143 tggtggcgttttgtttgaatttgatgaacctggacattcttttgtat 189  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||    
T  30313372 tggtggagttttgtttgaatttgatgaacctggacattcttttgtat 30313326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 186
Target Start/End: Complemental strand, 30284969 - 30284822
Alignment:
Q  54 tgcaccaacatttggctatggtgagacatgcatgttgacgtgtgttgaaatgatcaaaattgaggtgg--------------aaccatggtactgaactt 139  Q
    ||||| |||||||||| |||| | ||||||||| ||||||||||||||||||| || ||||||| |||              |||| |||||||||||||    
T  30284969 tgcacgaacatttggccatggcgtgacatgcattttgacgtgtgttgaaatgaacacaattgagttggcaaaaatgaaaagaaaccgtggtactgaactt 30284870  T
Q  140 -gggtggtggcgttttgtttgaatttgatgaacctggacattcttttg 186  Q
      ||||||||  |||||||||||||| |||||||||||||| ||||||    
T  30284869 atggtggtggatttttgtttgaatttaatgaacctggacatgcttttg 30284822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 30313476 - 30313409
Alignment:
Q  54 tgcaccaacatttggctatggtgagacatgcatgttgacgtgtgttgaaatgatcaaaattgaggtgg 121  Q
    ||||| |||||||||| |||| | ||||||||| |||||||||||||||| || |||||||||| |||    
T  30313476 tgcacgaacatttggccatggcgtgacatgcattttgacgtgtgttgaaaggaacaaaattgagttgg 30313409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 30313323 - 30313271
Alignment:
Q  208 atatacagtatttgtcttcatcact---caccaatggttgaattttcgatcct 257  Q
    |||||||||||||||||||||||||   ||||||||||||||||||| |||||    
T  30313323 atatacagtatttgtcttcatcactgaccaccaatggttgaattttccatcct 30313271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 384
Target Start/End: Complemental strand, 30297143 - 30297098
Alignment:
Q  339 cataattacgatcgaacaaattattgtaacattagctgatgagtgt 384  Q
    |||||||||||| |||||||||||||| ||||||| |||| |||||    
T  30297143 cataattacgattgaacaaattattgtcacattagatgatcagtgt 30297098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 339 - 383
Target Start/End: Complemental strand, 30289649 - 30289605
Alignment:
Q  339 cataattacgatcgaacaaattattgtaacattagctgatgagtg 383  Q
    ||||||||||||||| ||||||||||| ||||||| |||| ||||    
T  30289649 cataattacgatcgaccaaattattgtgacattagatgatcagtg 30289605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 150 - 184
Target Start/End: Complemental strand, 46807637 - 46807603
Alignment:
Q  150 gttttgtttgaatttgatgaacctggacattcttt 184  Q
    ||||||||| |||||||||||||||||||||||||    
T  46807637 gttttgttttaatttgatgaacctggacattcttt 46807603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 557 - 593
Target Start/End: Original strand, 34140888 - 34140924
Alignment:
Q  557 ctttgtttgcgagtttgtaggtgaatgaaggggaggg 593  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  34140888 ctttgattgcgagtttgtaggtgaaggaaggggaggg 34140924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 601
Target Start/End: Complemental strand, 31305992 - 31305943
Alignment:
Q  552 ttagtctttgtttgcgagtttgtaggtgaatgaaggggagggtttagaag 601  Q
    |||| ||||||||||||||||| ||| ||||||||| |||||||| ||||    
T  31305992 ttaggctttgtttgcgagtttggaggagaatgaaggagagggtttggaag 31305943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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