View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19964_high_13 (Length: 361)
Name: NF19964_high_13
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19964_high_13 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 361
Target Start/End: Complemental strand, 30552110 - 30551782
Alignment:
| Q |
14 |
agatcacaatcaaaggccttttcaagcttaatttactatccaactactattacatagctttattatcacaacatgtttttgttatactaaactattttcg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
30552110 |
agatcacaatcaaaggccttttcaagcttaatttactatccaactactattacatagctttattat-------------------acaaaactattttcg |
30552030 |
T |
|
| Q |
114 |
tttatgtatcgtaaaagaaaaacataccttgtaaaacaataactttagctgttccacgttatcgatttgtttgagaagattatgtgcttgaaatccaagt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30552029 |
tttatgtatcgtaaaagaaaaacataccttgtaaaacaataactttagctgttccacgttatcgatttgtttgagaagattatgtgcttgaaatccaagt |
30551930 |
T |
|
| Q |
214 |
ttttcccttctatcctttttatcttcatcaagaacaatcacaacagaagcattacaaattgacgacgaatgacacagaacgatgtcttgttcaagatcac |
313 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
30551929 |
ttttccattctatcctttttatcttcatcaagaacaatcacaacagaagcattacaaattgacgacgaatgacatagaacaatgtcttgttcaagatcac |
30551830 |
T |
|
| Q |
314 |
cctcataagcgaaatctgttaagcatcgactataaaccttgatggcat |
361 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
30551829 |
cctcataagcgaaatctgttaagcgtcgactataaaccttgatggcat |
30551782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 125 - 360
Target Start/End: Complemental strand, 30560686 - 30560451
Alignment:
| Q |
125 |
taaaagaaaaacataccttgtaaaacaataactttagctgttccacgttatcgatttgtttgagaagattatgtgcttgaaatccaagtttttcccttct |
224 |
Q |
| |
|
|||||||||| |||||||||||||||||||| || || ||||||| | |||||||||| | | |||||||| ||||||||| ||||||| |||| |||| |
|
|
| T |
30560686 |
taaaagaaaagcataccttgtaaaacaataatttcagtcgttccacttcatcgatttgtcttaaaagattatatgcttgaaaaccaagttcttccattct |
30560587 |
T |
|
| Q |
225 |
atcctttttatcttcatcaagaacaatcacaacagaagcattacaaattgacgacgaatgacacagaacgatgtcttgttcaagatcaccctcataagcg |
324 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||| ||| || ||||| |||| ||||||||| || || |||||||||||||||||||||| | |
|
|
| T |
30560586 |
gttctttttatcttcatcaacaacaatcacaacagaagcaatacgaacagacgatgaatcacacagaacaatatcctgttcaagatcaccctcataagag |
30560487 |
T |
|
| Q |
325 |
aaatctgttaagcatcgactataaaccttgatggca |
360 |
Q |
| |
|
||||| |||| | | |||||||||| ||||||||| |
|
|
| T |
30560486 |
aaatccgttaggtgtggactataaactttgatggca |
30560451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University