View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19964_high_14 (Length: 361)

Name: NF19964_high_14
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19964_high_14
NF19964_high_14
[»] chr6 (6 HSPs)
chr6 (5-344)||(14214140-14214479)
chr6 (54-344)||(14172698-14172988)
chr6 (54-344)||(14177234-14177524)
chr6 (54-247)||(14165867-14166060)
chr6 (94-237)||(13506157-13506300)
chr6 (94-150)||(13528887-13528943)
[»] chr8 (1 HSPs)
chr8 (1-33)||(9632162-9632194)
[»] chr7 (2 HSPs)
chr7 (1-31)||(6766773-6766803)
chr7 (1-31)||(35570277-35570307)
[»] chr1 (1 HSPs)
chr1 (1-31)||(15382649-15382679)
[»] chr2 (3 HSPs)
chr2 (1-30)||(11931701-11931730)
chr2 (1-29)||(9007007-9007035)
chr2 (1-29)||(43444763-43444791)
[»] chr4 (1 HSPs)
chr4 (1-33)||(19897646-19897678)


Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 5 - 344
Target Start/End: Original strand, 14214140 - 14214479
Alignment:
Q  5 taaaattgcgacatgtattttgaaacgaatctaatcatttattaaaccaacaattgtcaatggttgacttcgtaagcctccactacataagatgaattat 104  Q
    ||||||||||||||||||||| ||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  14214140 taaaattgcgacatgtattttaaaacgaatgaaatcatttattagaccaacaattgtcaatggttgacttcgtaagcctccactacataagatgaaatat 14214239  T
Q  105 agataaagatgcaattacacatagaaaatacatctcattgtttcgaagatggactgcagcacgaacattcttttcctctgggttttcaaaagctttctga 204  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14214240 agataaagatgcaattacacatagaaaatacatttcattgtttcgaagatggactgcagcacgaacattcttttcctctgggttttcaaaagctttctga 14214339  T
Q  205 cacttattagctccaaaaccagcagctattgcactttctcttgcagtatgaggatcagttggcaacagactcaatgcctttaataattcattaatagttg 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||| |||||||||||||||||||||| |||    
T  14214340 cacttattagctccaaaaccagcagctattgcactttctcttgcagttttaggatcagatggcaacagactcactgcctttaataattcattaataattg 14214439  T
Q  305 tttcatagaattcattaacacaactgttaagagctggatc 344  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  14214440 tttcatagaattcattgacacaactgttaagagctggatc 14214479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 54 - 344
Target Start/End: Original strand, 14172698 - 14172988
Alignment:
Q  54 acaattgtcaatggttgacttcgtaagcctccactacataagatgaattatagataaagatgcaattacacatagaaaatacatctcattgtttcgaaga 153  Q
    |||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14172698 acaattgtcaatggttgatttcataagcctacactacataagatgaattatagataaagatgcaattacacatagaaaatacatttcattgtttcgaaga 14172797  T
Q  154 tggactgcagcacgaacattcttttcctctgggttttcaaaagctttctgacacttattagctccaaaaccagcagctattgcactttctcttgcagtat 253  Q
    |||| ||||||||| |||| |||||||| ||| |||||||||||| ||| ||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  14172798 tggattgcagcacgcacatacttttcctgtggtttttcaaaagctgtctcacaattattagctccaaaaccagcagctattgcactatctcttgcagtat 14172897  T
Q  254 gaggatcagttggcaacagactcaatgcctttaataattcattaatagttgtttcatagaattcattaacacaactgttaagagctggatc 344  Q
    |||||||||||||||||| | |||||||||||  ||||||||||||||||||| ||||||||||||||  ||||||||| |||||||||||    
T  14172898 gaggatcagttggcaacaaaatcaatgccttttgtaattcattaatagttgttacatagaattcattataacaactgttgagagctggatc 14172988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 54 - 344
Target Start/End: Original strand, 14177234 - 14177524
Alignment:
Q  54 acaattgtcaatggttgacttcgtaagcctccactacataagatgaattatagataaagatgcaattacacatagaaaatacatctcattgtttcgaaga 153  Q
    |||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14177234 acaattgtcaatggttgatttcataagcctacactacataagatgaattatagataaagatgcaattacacatagaaaatacatttcattgtttcgaaga 14177333  T
Q  154 tggactgcagcacgaacattcttttcctctgggttttcaaaagctttctgacacttattagctccaaaaccagcagctattgcactttctcttgcagtat 253  Q
    |||| ||||||||| |||| |||||||| ||| |||||||||||| ||| ||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  14177334 tggattgcagcacgcacatacttttcctgtggtttttcaaaagctgtctcacaattattagctccaaaaccagcagctattgcactatctcttgcagtat 14177433  T
Q  254 gaggatcagttggcaacagactcaatgcctttaataattcattaatagttgtttcatagaattcattaacacaactgttaagagctggatc 344  Q
    |||||||||||||||||| | |||||||||||  ||||||||||||||||||| ||||||||||||||  ||||||||| |||||||||||    
T  14177434 gaggatcagttggcaacaaaatcaatgccttttgtaattcattaatagttgttacatagaattcattataacaactgttgagagctggatc 14177524  T

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Target: chr6; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 54 - 247
Target Start/End: Original strand, 14165867 - 14166060
Alignment:
Q  54 acaattgtcaatggttgacttcgtaagcctccactacataagatgaattatagataaagatgcaattacacatagaaaatacatctcattgtttcgaaga 153  Q
    |||||||||||||||| | ||  || | ||| |||| |||||||||||||||||||| || ||||||||||  |||||||| ||||||||||||||||||    
T  14165867 acaattgtcaatggtttattttatatgtctcaactaaataagatgaattatagataatgaagcaattacaccaagaaaatagatctcattgtttcgaaga 14165966  T
Q  154 tggactgcagcacgaacattcttttcctctgggttttcaaaagctttctgacacttattagctccaaaaccagcagctattgcactttctcttg 247  Q
    |||| || |||| |||| |||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  14165967 tggattgtagcaagaaccttcttttcctctggtttttcaaaacctttctgacaattattagctccaaaaccagcagctattgcactttctcttg 14166060  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 94 - 237
Target Start/End: Complemental strand, 13506300 - 13506157
Alignment:
Q  94 agatgaattatagataaagatgcaattacacatagaaaatacatctcattgtttcgaagatggactgcagcacgaacattcttttcctctgggttttcaa 193  Q
    |||||||||||||||||||| || ||||||  || |||| | |||||||||||||||   |||| |||  || | |||| |||||||  ||| |||| ||    
T  13506300 agatgaattatagataaagaagccattacatttacaaaaaagatctcattgtttcgatcttggattgcgtcaaggacatacttttccggtggattttgaa 13506201  T
Q  194 aagctttctgacacttattagctccaaaaccagcagctattgca 237  Q
     |||||| | ||| | || | ||||||||||||||| |||||||    
T  13506200 gagctttgttacaatgatcacctccaaaaccagcagttattgca 13506157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 13528943 - 13528887
Alignment:
Q  94 agatgaattatagataaagatgcaattacacatagaaaatacatctcattgtttcga 150  Q
    |||||||||||||||||||| || ||||||  || |||| | |||||||||||||||    
T  13528943 agatgaattatagataaagaagctattacatttacaaaaaagatctcattgtttcga 13528887  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 9632194 - 9632162
Alignment:
Q  1 attgtaaaattgcgacatgtattttgaaacgaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  9632194 attgtaaaattgcgacatgtattttgaaacgaa 9632162  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 6766773 - 6766803
Alignment:
Q  1 attgtaaaattgcgacatgtattttgaaacg 31  Q
    |||||||||||||||||||||||||||||||    
T  6766773 attgtaaaattgcgacatgtattttgaaacg 6766803  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 35570277 - 35570307
Alignment:
Q  1 attgtaaaattgcgacatgtattttgaaacg 31  Q
    |||||||||||||||||||||||||||||||    
T  35570277 attgtaaaattgcgacatgtattttgaaacg 35570307  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 15382649 - 15382679
Alignment:
Q  1 attgtaaaattgcgacatgtattttgaaacg 31  Q
    |||||||||||||||||||||||||||||||    
T  15382649 attgtaaaattgcgacatgtattttgaaacg 15382679  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 11931730 - 11931701
Alignment:
Q  1 attgtaaaattgcgacatgtattttgaaac 30  Q
    ||||||||||||||||||||||||||||||    
T  11931730 attgtaaaattgcgacatgtattttgaaac 11931701  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 9007007 - 9007035
Alignment:
Q  1 attgtaaaattgcgacatgtattttgaaa 29  Q
    |||||||||||||||||||||||||||||    
T  9007007 attgtaaaattgcgacatgtattttgaaa 9007035  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 43444763 - 43444791
Alignment:
Q  1 attgtaaaattgcgacatgtattttgaaa 29  Q
    |||||||||||||||||||||||||||||    
T  43444763 attgtaaaattgcgacatgtattttgaaa 43444791  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 19897678 - 19897646
Alignment:
Q  1 attgtaaaattgcgacatgtattttgaaacgaa 33  Q
    ||||||||||||||||| |||||||||||||||    
T  19897678 attgtaaaattgcgacaagtattttgaaacgaa 19897646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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