View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19964_high_16 (Length: 349)
Name: NF19964_high_16
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19964_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 41864066 - 41864301
Alignment:
| Q |
1 |
ctatgaagcacgtaagtgataagaaagtgcatggaatgacaactaaatgagtcatacaacatggagaacaaacacaatacataagacgccatatatacga |
100 |
Q |
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| T |
41864066 |
ctatgaagcacgtaagtgataagaaagtgcatggaatgataactaaatgagtcatacaacatggagaacaaacacaatacataagacgccatatatacga |
41864165 |
T |
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| Q |
101 |
aggaacaacctcattttcgcacaagttcatgtgaatttaactgaacaatagcattcaaaacatgatatttgttggcaatgaacattgcttatatgtcttg |
200 |
Q |
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| T |
41864166 |
aggaacaacctcattttcgcacaagttcatgtgaatttaactgaacaatagcattcaaaacatgatatttgttggcaatgaacattgcttatatgtcttg |
41864265 |
T |
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| Q |
201 |
taaattttatttgaggcacactcaattcatcaaaca |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
41864266 |
taaattttatttgaggcacactcaattcatcaaaca |
41864301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 332
Target Start/End: Original strand, 41864393 - 41864421
Alignment:
| Q |
304 |
ccaattgatcctccctcaacctccaatat |
332 |
Q |
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| T |
41864393 |
ccaattgatcctccctcaacctccaatat |
41864421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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