View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19964_high_18 (Length: 341)
Name: NF19964_high_18
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19964_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 325
Target Start/End: Complemental strand, 2327800 - 2327488
Alignment:
| Q |
13 |
aaaataaagcaagttttaatattataac---tacattaacttatgttatgctagcacgttttattctataccataaacaagatatataaaaatgaacaac |
109 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2327800 |
aaaataaagcaagttttaatattataacaactacattaacttatgttatgcgagcacgttttattctataccagaaacaagatatataaaaatgaacaac |
2327701 |
T |
|
| Q |
110 |
tatgatagtaaaagcatatgtatgcacaatggatcattgtatgaagcaaaatcttaccaatgtgacaaatctacatataatattccgctgctgtgttatg |
209 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2327700 |
tatgatagtaaaagcatatgtatgcataatggatcgttgtatgaagcaaaatcttaccaatgtgacaaatctacatataatattcc---gctgtgttatg |
2327604 |
T |
|
| Q |
210 |
acattgccaagagagaatctaggatggttcacacaacaacatacatttaactttcaccaagaactaaagcaatatgttattgttatctacatacgcataa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2327603 |
acattgccaagagagaatctaggatggttcacacaacaacatacatttaactttcaccaagaactaaagcaatatgttattgttatctacatacgcataa |
2327504 |
T |
|
| Q |
310 |
cacacataatctatat |
325 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2327503 |
cacacataatctatat |
2327488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 123 - 251
Target Start/End: Complemental strand, 2294490 - 2294362
Alignment:
| Q |
123 |
gcatatgtatgcacaatggatcattgtatgaagcaaaatcttaccaatgtgacaaatctacatataatattccgctgctgtgttatgacattgccaag-a |
221 |
Q |
| |
|
|||||| |||||| || |||||||| |||||| ||||||| |||| | ||||||||| |||||||||| ||| |||||||||||||||||| |||| | |
|
|
| T |
2294490 |
gcatatatatgcataacggatcattatatgaaacaaaatcccacca-tatgacaaatccacatataatactcccctgctgtgttatgacattctcaagca |
2294392 |
T |
|
| Q |
222 |
gagaatctaggatggttcacacaacaacat |
251 |
Q |
| |
|
||||||||||| |||||||||||||||||| |
|
|
| T |
2294391 |
gagaatctagggtggttcacacaacaacat |
2294362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 127 - 247
Target Start/End: Complemental strand, 2321798 - 2321678
Alignment:
| Q |
127 |
atgtatgcacaatggatcattgtatgaagcaaaatcttaccaatgtgacaaatctacatataatattccgctgctgtgttatgacattgccaag-agaga |
225 |
Q |
| |
|
||||||||| || ||||||||||||||| ||||||| |||| | ||| ||||| |||||||||||||| ||| |||||||||||||| |||| ||||| |
|
|
| T |
2321798 |
atgtatgcataagggatcattgtatgaaacaaaatccgacca-tatgagaaatccacatataatattcccctgttgtgttatgacattctcaagcagaga |
2321700 |
T |
|
| Q |
226 |
atctaggatggttcacacaaca |
247 |
Q |
| |
|
|||||| |||||||||||||| |
|
|
| T |
2321699 |
atctagagtggttcacacaaca |
2321678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 2331446 - 2331351
Alignment:
| Q |
67 |
gttttattctataccataaacaagatatataaaaatgaacaactatgatagtaaaagcatatgtatgcacaatggatcattgtatgaagcaaaatc |
162 |
Q |
| |
|
|||||||| |||| | ||||||||||| ||| |||||||||||||||||||||| | ||||||||||| || ||||||| ||||| ||||||| |
|
|
| T |
2331446 |
gttttattttatataagaaacaagatatgtaagaatgaacaactatgatagtaaaggaatatgtatgcataagtgatcatttgatgaaacaaaatc |
2331351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 2304275 - 2304214
Alignment:
| Q |
67 |
gttttattctataccataaacaagatatataaaaatgaacaactatgatagtaaaagcatat |
128 |
Q |
| |
|
|||||||| ||||| | ||||||||||||||| ||||||||| ||||||| |||| |||||| |
|
|
| T |
2304275 |
gttttattttatacaagaaacaagatatataagaatgaacaattatgatattaaaggcatat |
2304214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 253
Target Start/End: Complemental strand, 2304046 - 2303968
Alignment:
| Q |
176 |
aaatctacatataatattccgctgctgtgttatgacattgccaag-agagaatctaggatggttcacacaacaacatac |
253 |
Q |
| |
|
||||| |||||||||||| | ||||||||||||||||| |||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
2304046 |
aaatccacatataatatttctttgctgtgttatgacattctcaagcagagaatctagagtggttcacacaggaacatac |
2303968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University