View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19964_high_2 (Length: 628)
Name: NF19964_high_2
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19964_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 530; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 15 - 615
Target Start/End: Complemental strand, 36729129 - 36728528
Alignment:
| Q |
15 |
accaataactgtgatcttctagtgatcaggaacaatttgtgtacaagaatcatgagatatccatattttgnnnnnnnnttaaaggtgaaacataagaagt |
114 |
Q |
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| T |
36729129 |
accaataactgggatcttctagtgatcaggaacaatttgtgtacaagaatcatgagatatccatattttgaaaaaaatttaaaggtgaaacataagaagt |
36729030 |
T |
|
| Q |
115 |
tttggagttatcactaataagaagagccaa-tatagaaccttcatttgagtgtacaggttaccaattcccctcacattccaatatagtaccttcatttgg |
213 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36729029 |
tttggagttatcactaataagaagagccaaatatagaaccttcatttgagtgtacaggttaccaattcccctcacattccaatatagaaccttcatttgg |
36728930 |
T |
|
| Q |
214 |
aactagtggagtggtaaactccccagaaatgggtttgatatcaggcttgtcacctttattccaaatccaaagaccatgaagattaaatttgcaatcttcc |
313 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36728929 |
aactagtggagtggtaaactccccagaaatggatttgatatcaggcttgtcacctttattccaaatccaaagaccatgaagattaaatttgcaatattcc |
36728830 |
T |
|
| Q |
314 |
actccttctcctttcaattatgacaaatggtttcagaagatcgtgaggttcaatgtcacaagcattcgcgagagcttgtgcaaaggtgagagtggctgtg |
413 |
Q |
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| T |
36728829 |
actccttctcctttcaattatgacaaatggtttcagaagatcgtgaggttcgatgtcacaagcattcgcgagagcttgtgcaaaggtgagagtggctgtg |
36728730 |
T |
|
| Q |
414 |
cgattaccagtacgcggagcggatggcggcagagaggccaataaagaccatggcacaatgatagccatggttacttgcgctccaagaaaagaaataaacc |
513 |
Q |
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| T |
36728729 |
cggttaccagtacgtgcagcggatggcggcagagaggccaataaagaccatggaacaatgatagccatggttacttgcgctccaagaaaagaaataaacc |
36728630 |
T |
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| Q |
514 |
atggtttcagaattcaaaggattatacatctgccaccattaatgaatcttaaacgtatatatgagaaaaactaaagatataatcgtatctcatcacacag |
613 |
Q |
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| T |
36728629 |
atggtttcagaattcaaaggattatacatctgccaccattaatgaatctttaacgtatatatgagaaaaactaaagatataatcgtatctcatcacacag |
36728530 |
T |
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| Q |
614 |
gt |
615 |
Q |
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| T |
36728529 |
gt |
36728528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 256 - 609
Target Start/End: Complemental strand, 36715262 - 36714914
Alignment:
| Q |
256 |
aggcttgtcacctttattccaaatccaaagaccatgaagattaaatttgcaatcttccactccttctcctttcaattatgacaaatggtttcagaagatc |
355 |
Q |
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|||| |||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36715262 |
aggcctgtcacctttattcaaaatccaacgaccatgaagaataaattttcaatcttccactcctt------tcaattatgacaaatggtttcagaagatc |
36715169 |
T |
|
| Q |
356 |
gtgaggttcaatgtcacaagcattcgcgagagcttgtgcaaaggtgagagtggctgtgcgattaccagtacgcggagcggatggcggcagagaggccaat |
455 |
Q |
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| T |
36715168 |
gtgaggttcaatgtcacaagcattcgcaagagcttgtgcaaaggtctgagtagttgtgcggttgccaataggcatagcggatggcggcagagaggccaaa |
36715069 |
T |
|
| Q |
456 |
aaagaccatggcacaatgatagccatggttacttgcgctccaagaaaagaaat-aaaccatggtttcagaattcaaaggattatacatctgccaccatta |
554 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| ||| || ||| ||| || |
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| T |
36715068 |
aaagaccatggcacaatgttagccatggttacttgcgctccaagaaaatcaataaaaccatgatttcagaattcaaaggataatatatatgctaccgttt |
36714969 |
T |
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| Q |
555 |
atgaatcttaaacgtatatatgagaaaaactaaagatataatcgtatctcatcac |
609 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
36714968 |
atgagtcttaaacgtatatatgaggaaaactaaagatataatcttatctcatcac |
36714914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 139
Target Start/End: Complemental strand, 36716001 - 36715899
Alignment:
| Q |
36 |
gtgatcaggaacaatttgtgtacaagaatcatgagatatccatattttgnnnnnnnnttaaaggtgaaacataagaagttttggagttatcactaataag |
135 |
Q |
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||||||| |||||||||||||||||||||||||||| || |||||||| | ||||||||| ||||| |||| ||||||||||||| |||||| |
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| T |
36716001 |
gtgatcataaacaatttgtgtacaagaatcatgagatgtcaatattttg-aaaattttaaaaggtgaagcataacaagtgttggagttatcaccaataag |
36715903 |
T |
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| Q |
136 |
aaga |
139 |
Q |
| |
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|||| |
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| T |
36715902 |
aaga |
36715899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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