View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19964_high_22 (Length: 310)
Name: NF19964_high_22
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19964_high_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 2556933 - 2556642
Alignment:
| Q |
1 |
ttaattagatagacaagagacatttggaaaagtatttctaactgttccatgagcatttctacnnnnnnntgaagtcatttttcctgcttgagtagctaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2556933 |
ttaattagatagacaagagacatttggaaaagtatttctaactgttccatgagcatttctacaaaaaaatgaagtcatttttcctgcttgagtagctaca |
2556834 |
T |
|
| Q |
101 |
atgttattttgatccaatagaatgtcgaaacaaccagaggagctacaatttaaattaacagctatcttgctagcagaagttccagtaaatcctcgatatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
2556833 |
atgttattttgatccaatagaatgtcgaaacaaccagaggagctacaatttaaattaacagctatcttgctagcagaagttccggtaaatcctcgatatg |
2556734 |
T |
|
| Q |
201 |
tcaccgaactcaccctcacagatgtatcctaattagaaaaattcaactcgtatgtaactacgatatgtaaaaccaatcaagagtgaagtaat |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
2556733 |
tcaccgaactcaccctcacagatgtatcctaattaaaaaatttcaactcgtatgtaactatgatatgtaaaaccaatcaagagtgaaataat |
2556642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 2566759 - 2566528
Alignment:
| Q |
1 |
ttaattagatagacaagagacatttggaaaagtatttctaactgttccatgagcatttctacnnnnnnntgaagtcatttttcctgcttgagtagctaca |
100 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
2566759 |
ttaactagataggcaagagacatttggaaaagtatttctaactgttccatgagcatttctacaaaaaaatgaagtcttttttcctgcttgagtagctaca |
2566660 |
T |
|
| Q |
101 |
atgttattttgatccaatagaatgtcgaaacaaccagaggagctacaatttaaattaacagctatcttgctagcagaagttccagtaaatcctcgatatg |
200 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2566659 |
atgttattttgatccaatagaatattgaaacaaccaggggagctacaatttaaattaacagctatcttgctagcagaagttccaataaatcctcgatatg |
2566560 |
T |
|
| Q |
201 |
tcaccgaactcaccctcacagatgtatcctaa |
232 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||| |
|
|
| T |
2566559 |
tcacagaactcaccttcacagatgtatcctaa |
2566528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 2551323 - 2551120
Alignment:
| Q |
1 |
ttaattagatagacaagagacatttggaaaagtatttctaactgttccatgagcatttctacnnnnnnntgaagtcatttttcctgcttgagtagctaca |
100 |
Q |
| |
|
|||||||||||| |||| |||| |||||| ||||||||||||| |||||||||||||||||| |||||| | ||||||| ||||| || |||| |
|
|
| T |
2551323 |
ttaattagataggcaagggacaattggaatagtatttctaactattccatgagcatttctacaaaaagaggaagtcttctttcctggttgagcagataca |
2551224 |
T |
|
| Q |
101 |
atgttattttgatccaatagaatgtcgaaacaaccagaggagctacaatttaaattaacagctatcttgctagcagaagttccagtaaatcctcgatatg |
200 |
Q |
| |
|
|||||||||||||| |||||||| | ||||||||||| || ||||| ||||||| || ||||| | ||| ||||||||| |||||||||||||||| |
|
|
| T |
2551223 |
atgttattttgatctaatagaatcttaaaacaaccagaagaactacactttaaatcaattgctatatcactataagaagttccggtaaatcctcgatatg |
2551124 |
T |
|
| Q |
201 |
tcac |
204 |
Q |
| |
|
|||| |
|
|
| T |
2551123 |
tcac |
2551120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 2543837 - 2543637
Alignment:
| Q |
14 |
caagagacatttggaaaagtatttctaactgttccatgagcatttctacnnnnnnntgaagtcatttttcctgcttgagtagctacaatgttattttgat |
113 |
Q |
| |
|
|||| ||||||||||| |||||||||| | |||||||| |||||| ||| |||| | | ||||||| ||||| || |||||||| ||||| | |
|
|
| T |
2543837 |
caagggacatttggaacagtatttctagcagttccatgggcatttgtacaaaaagaagaagccttctttcctggttgagcagaaacaatgttgttttgtt |
2543738 |
T |
|
| Q |
114 |
ccaatagaatgtcgaaacaaccagaggagctacaatttaaattaacagctatcttgctagcagaagttccagtaaatcctcgatatgtcaccgaactcac |
213 |
Q |
| |
|
|||||| |||||| |||||||||| |||||||||||||| | || ||||| ||||||||||||||| ||||||||| || || |||| |||||||| |
|
|
| T |
2543737 |
ccaataaaatgtcataacaaccagaagagctacaatttaactgaatagctaagccgctagcagaagttccggtaaatccttgaaatttcactgaactcac |
2543638 |
T |
|
| Q |
214 |
c |
214 |
Q |
| |
|
| |
|
|
| T |
2543637 |
c |
2543637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 98 - 214
Target Start/End: Complemental strand, 2534309 - 2534193
Alignment:
| Q |
98 |
acaatgttattttgatccaatagaatgtcgaaacaaccagaggagctacaatttaaattaacagctatcttgctagcagaagttccagtaaatcctcgat |
197 |
Q |
| |
|
|||||||| ||||| ||||||| |||||| |||||||||| |||||||||||||| | || ||||| ||||||||||||||| |||||||||||| |
|
|
| T |
2534309 |
acaatgttgttttgttccaataaaatgtcataacaaccagaagagctacaatttaactgaatagctaagccgctagcagaagttccggtaaatcctcgaa |
2534210 |
T |
|
| Q |
198 |
atgtcaccgaactcacc |
214 |
Q |
| |
|
|| |||| ||||||||| |
|
|
| T |
2534209 |
atttcactgaactcacc |
2534193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 204
Target Start/End: Complemental strand, 1831959 - 1831836
Alignment:
| Q |
81 |
ttcctgcttgagtagctacaatgttattttgatccaatagaatgtcgaaacaaccagaggagctacaatttaaattaacagctatcttgctagcagaagt |
180 |
Q |
| |
|
|||||| ||||| || ||||| || |||||||||||| |||||| | |||||||| |||| ||||||||| | || ||||| | | |||| ||||| |
|
|
| T |
1831959 |
ttcctggttgagcagagacaattttgttttgatccaattgaatgttggttcaaccagatgagccacaatttaactgaatagctaagtcgttagctgaagt |
1831860 |
T |
|
| Q |
181 |
tccagtaaatcctcgatatgtcac |
204 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
1831859 |
tccagtaaatcctcgatatgtcac |
1831836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 204
Target Start/End: Complemental strand, 1866402 - 1866279
Alignment:
| Q |
81 |
ttcctgcttgagtagctacaatgttattttgatccaatagaatgtcgaaacaaccagaggagctacaatttaaattaacagctatcttgctagcagaagt |
180 |
Q |
| |
|
|||||| ||||| || ||||| || |||||||||||| |||||| | |||||||| |||| ||||||||| | || ||||| | | |||| ||||| |
|
|
| T |
1866402 |
ttcctggttgagcagagacaattttgttttgatccaattgaatgttggttcaaccagatgagccacaatttaactgaatagctaagtcgttagctgaagt |
1866303 |
T |
|
| Q |
181 |
tccagtaaatcctcgatatgtcac |
204 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
1866302 |
tccagtaaatcctcgatatgtcac |
1866279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 2546884 - 2546828
Alignment:
| Q |
80 |
tttcctgcttgagtagctacaatgttattttgatccaatagaatgtcgaaacaacca |
136 |
Q |
| |
|
||||||| ||||| || ||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
2546884 |
tttcctgattgagaagagacaatgtcattttgatccaatagaatgttcaaacaacca |
2546828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University