View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19964_high_24 (Length: 289)
Name: NF19964_high_24
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19964_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 33687009 - 33687265
Alignment:
| Q |
16 |
atgaagccaggggacaaattatttgagaaaatcaatgggggagtcatggagagcaaaattggggtggcggttttctctccgcgttattgtgagtcttatt |
115 |
Q |
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| T |
33687009 |
atgaagccaggggacaaattatttgagaaaatcaacgggggagtcatggagagcaaaattggggtggcggttttctctccgcgttattgtgagtcttatt |
33687108 |
T |
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| Q |
116 |
tttgcctccatgaacttgtccttttaacagcgttaaagaagaaggtgattcctatattttgtgatgttaagccttctcaactgcgtgttgttaagaatgc |
215 |
Q |
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|||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33687109 |
tttgcctccatgaacttgcccttttaacggcgttgaagaagaaggtgattcctatattttgtgatgttaagccttctcaactgcgcgttgttaagaatgc |
33687208 |
T |
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| Q |
216 |
aaaatggtcggaggaggaactccggaggtttagatgggctcttgacgaggctaagaa |
272 |
Q |
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| T |
33687209 |
aaagtggtcggaggaggaactccggaggtttagatgggctcttgacgaggctaagaa |
33687265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 33704063 - 33704316
Alignment:
| Q |
16 |
atgaagccaggggacaaattatttgagaaaatcaatgggggagtcatggagagcaaaattggggtggcggttttctctccgcgttattgtgagtcttatt |
115 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33704063 |
atgaagccaggggacaaattatttgagaaaatcaacgggggagtcatggagagcaaaattggggtggcggttttctctccgcgttattgtgagtcttatt |
33704162 |
T |
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| Q |
116 |
tttgcctccatgaacttgtccttttaacagcgttaaagaagaaggtgattcctatattttgtgatgttaagccttctcaactgcgtgttgttaagaatgc |
215 |
Q |
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| T |
33704163 |
tttgcctccatgaacttgcccttttaacggcgttgaagaagaaggtgattcctatattttgtgatgttaagccttctcaactgcgcgttgttaagaatgc |
33704262 |
T |
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| Q |
216 |
aaaatggtcggaggaggaactccggaggtttagatgggctcttgacgaggctaa |
269 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33704263 |
aaagtggtcggaggaggaactccggaggtttagatgggctctcgacgaggctaa |
33704316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 33679542 - 33679783
Alignment:
| Q |
16 |
atgaagccaggggacaaattatttgagaaaatcaatgggggagtcatggagagcaaaattggggtggcggttttctctccgcgttattgtgagtcttatt |
115 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33679542 |
atgaagccaggggacaaattatttgagaaaatcaacgggggagtcatggagagcaaaattggggtggcggttttctctccgcgttattgtgagtcttatt |
33679641 |
T |
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| Q |
116 |
tttgcctccatgaacttgtccttttaacagcgttaaagaagaaggtgattcctatattttgtgatgttaagccttctcaactgcgtgttgttaagaatgc |
215 |
Q |
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|||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33679642 |
tttgcctccatgaacttgcccttttaacggcgttgaagaagaaggtgattcctatattttgtgatgttaagccttctcaactgcgcgttgttaagaatgc |
33679741 |
T |
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| Q |
216 |
aaaatggtcggaggaggaactccggaggtttagatgggctct |
257 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33679742 |
aaagtggtcggaggaggaactccggaggtttagatgggctct |
33679783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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