View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19964_high_29 (Length: 248)
Name: NF19964_high_29
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19964_high_29 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 103 - 247
Target Start/End: Complemental strand, 44102958 - 44102814
Alignment:
| Q |
103 |
taactcatacccatacccaaaagcataaaactcaaagctgcaaaactcttggttgaaactcaagtttcaaaattcttcaatcaatttgcaactacatcac |
202 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44102958 |
taactcatacccatacccgaaagcataaaactcaaagctgcaaaactcttggttgaaactcaaatttcaaaattcttcaatcaatttgcaactacatcac |
44102859 |
T |
|
| Q |
203 |
tttcatctccaattctttctcgttaggatccctgcaagtgatcta |
247 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44102858 |
tttcatctccaattctttctcgttaggattcctgcaagtgatcta |
44102814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 114 - 247
Target Start/End: Complemental strand, 2293183 - 2293061
Alignment:
| Q |
114 |
catacccaaaagcataaaactcaaagctgcaaaactcttggttgaaactcaagtttcaaaattcttcaatcaatttgcaactacatcactttcatctcca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
2293183 |
catacccaaaagcataaaactcaaagctgcaaaactcttggttgaaa-----------aaattcttcgatcaatttgcaactacatcacttttatctcca |
2293095 |
T |
|
| Q |
214 |
attctttctcgttaggatccctgcaagtgatcta |
247 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||| |
|
|
| T |
2293094 |
attctttctcgttaggattcctccaagtgatcta |
2293061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 114 - 248
Target Start/End: Complemental strand, 51218630 - 51218507
Alignment:
| Q |
114 |
catacccaaaagcataaaactcaaagctgcaaaactcttggttgaaactcaagtttcaaaattcttcaatcaatttgcaactacatcactttcatctcca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
51218630 |
catacccaaaagcataaaactcaaagctgcaaaactcttggttgaaa-----------aaattctttgatcaatttgcaactacatcactttcatctcca |
51218542 |
T |
|
| Q |
214 |
attctttctcgttaggatccctgcaagtgatctaa |
248 |
Q |
| |
|
||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
51218541 |
attctttgtcgttaggattcctccaagtgatctaa |
51218507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University