View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19964_high_32 (Length: 231)

Name: NF19964_high_32
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19964_high_32
NF19964_high_32
[»] chr7 (14 HSPs)
chr7 (20-195)||(4712033-4712208)
chr7 (26-195)||(4845979-4846148)
chr7 (20-201)||(4653476-4653657)
chr7 (20-178)||(4666917-4667075)
chr7 (20-155)||(4636859-4636994)
chr7 (23-155)||(4697151-4697283)
chr7 (62-212)||(4647471-4647619)
chr7 (26-158)||(4662990-4663122)
chr7 (20-216)||(4783793-4783989)
chr7 (20-194)||(4816222-4816396)
chr7 (31-152)||(4863927-4864048)
chr7 (43-155)||(4643673-4643785)
chr7 (40-158)||(4672675-4672793)
chr7 (20-113)||(4630971-4631064)
[»] chr4 (1 HSPs)
chr4 (20-195)||(18925700-18925875)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 4712033 - 4712208
Alignment:
Q  20 gaatggatgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712033 gaatggatgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgct 4712132  T
Q  120 tatcaagaataaaggtgatagagtttttcagatatttatcaatgatattttggctgaacaatacgctgatgtgatt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712133 tatcaagaataaaggtgatagagtttttcagatatttatcaatgatattttggctgaacaatacgctgatgtgatt 4712208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 4845979 - 4846148
Alignment:
Q  26 atgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaa 125  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4845979 atgtgacagaggattataatgtaacttggaatttcgaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttaccaa 4846078  T
Q  126 gaataaaggtgatagagtttttcagatatttatcaatgatattttggctgaacaatacgctgatgtgatt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  4846079 gaataaaggtgatagagtttttcagatatttatcaatgatattttggctgaactatatgctgatgtgatt 4846148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 4653657 - 4653476
Alignment:
Q  20 gaatggatgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgct 119  Q
    ||||| |||| ||||||||||| |||||||||||||||||| ||||||| || |  |||||||||||||| ||||||||||||||||| ||||||  ||     
T  4653657 gaatgaatgtcacagaggattacaatgtaacttggaatttcgaagttgactcaacatttacttatatggtcaggttacatttttgtgaatttgattggcg 4653558  T
Q  120 tatcaagaataaaggtgatagagtttttcagatatttatcaatgatattttggctgaacaatacgctgatgtgattacatgg 201  Q
    ||||||| ||||||||||||||||||| |||||||||||  ||||| | |||||||||| | | |||||||||||| |||||    
T  4653557 tatcaaggataaaggtgatagagttttccagatatttatacatgatttcttggctgaaccaaatgctgatgtgatttcatgg 4653476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 4667075 - 4666917
Alignment:
Q  20 gaatggatgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgct 119  Q
    |||||||||  | |||| |||||||||| || |||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||  ||     
T  4667075 gaatggatgccaaagagaattataatgtgacatggaattttaaagttgattctatttttacttatatggtaaggttgcatttttgtgagtttgattggca 4666976  T
Q  120 tatcaagaataaaggtgatagagtttttcagatatttatcaatgatattttggctgaac 178  Q
    ||||||||||  ||||||||||||||||||||| |||||  |||||||| |||||||||    
T  4666975 tatcaagaatccaggtgatagagtttttcagatttttatagatgatattatggctgaac 4666917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 4636994 - 4636859
Alignment:
Q  20 gaatggatgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgct 119  Q
    ||||| ||| |||| |||||||||||||||||||||| ||  |||||||||||  ||||||||||||||||||||||||||||||||||||||||  ||     
T  4636994 gaatgtatgagacaaaggattataatgtaacttggaactttgaagttgattctgcttttacttatatggtaaggttacatttttgtgagtttgattggca 4636895  T
Q  120 tatcaagaataaaggtgatagagtttttcagatatt 155  Q
    ||||||  |||||||||||||||| |||||||||||    
T  4636894 tatcaactataaaggtgatagagtctttcagatatt 4636859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 155
Target Start/End: Original strand, 4697151 - 4697283
Alignment:
Q  23 tggatgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttat 122  Q
    |||||| |||||||||||  |||||||||||||||||| ||||||||  | |||||||||||||||||||||| ||||||||||||||||||| || |||    
T  4697151 tggatgagacagaggatttcaatgtaacttggaatttcgaagttgatgttggttttacttatatggtaaggttgcatttttgtgagtttgatcagcatat 4697250  T
Q  123 caagaataaaggtgatagagtttttcagatatt 155  Q
    ||| |||| |||||||||||| ||||| |||||    
T  4697251 caaaaatataggtgatagagtctttcaaatatt 4697283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 62 - 212
Target Start/End: Complemental strand, 4647619 - 4647471
Alignment:
Q  62 aagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagagtttttcagatatttatcaa 161  Q
    ||||||||||| ||||||||||||||||||||||||  |||||||||||||||   | ||| ||||||  |||||||| ||||||||| || |||||  |    
T  4647619 aagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaattcaggtgatacagtttttcatatgtttataga 4647522  T
Q  162 tgatattttggctgaacaatacgctgatgtgattacatgggctggtgctcc 212  Q
    |||||||||||||||||| || |||||||||||| ||||||||||||||||    
T  4647521 tgatattttggctgaacattatgctgatgtgattgcatgggctggtgctcc 4647471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 158
Target Start/End: Complemental strand, 4663122 - 4662990
Alignment:
Q  26 atgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaa 125  Q
    ||||||||||||||||||||||||||||||||||  | |||||||||  |||||| || ||||||||||||||||||||||||||||||| |  |||||     
T  4663122 atgtgacagaggattataatgtaacttggaattttgaggttgattcttcttttacatacatggtaaggttacatttttgtgagtttgatccgaatatcat 4663023  T
Q  126 gaataaaggtgatagagtttttcagatatttat 158  Q
     ||||||||||||||| | |||||||| |||||    
T  4663022 aaataaaggtgatagaatgtttcagatttttat 4662990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 4783793 - 4783989
Alignment:
Q  20 gaatggatgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgct 119  Q
    ||||| ||| |||||||||||| |||||||||||||| ||  |||||||||||  ||||||||||||||||||||||||||||||||||||||||  ||     
T  4783793 gaatgtatgagacagaggattacaatgtaacttggaactttgaagttgattctgcttttacttatatggtaaggttacatttttgtgagtttgattggca 4783892  T
Q  120 tatcaagaataaaggtgatagagtttttcagatatttatcaatgatattttggctgaacaatacgctgatgtgattacatgggctggtgctcctttg 216  Q
    ||||||  |  | ||||||||| |||||||||| || ||  |||||| ||||||||||||    ||||||||||| |  |||  |||||||||||||    
T  4783893 tatcaaacaggatggtgatagaatttttcagattttcatagatgatagtttggctgaacatgctgctgatgtgataaggtggagtggtgctcctttg 4783989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 4816222 - 4816396
Alignment:
Q  20 gaatggatgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgct 119  Q
    ||||| ||| |||||||||||| |||||||||||||| ||  |||||||||||  ||||||||||||||||||||||||||||||||||||||||  ||     
T  4816222 gaatgtatgagacagaggattacaatgtaacttggaactttgaagttgattctgcttttacttatatggtaaggttacatttttgtgagtttgattggca 4816321  T
Q  120 tatcaagaataaaggtgatagagtttttcagatatttatcaatgatattttggctgaacaatacgctgatgtgat 194  Q
    ||||||  |  | ||||||||| |||||||||| || ||  |||||| |||||||||||  |  |||||||||||    
T  4816322 tatcaaacaggatggtgatagaatttttcagattttcatagatgatagtttggctgaactttttgctgatgtgat 4816396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 4864048 - 4863927
Alignment:
Q  31 acagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaata 130  Q
    |||||||| || |||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |  ||| |  ||||    
T  4864048 acagaggagtacaatgtaacttggaattttgaagttgattctaattttacttatatggtaaggttacatttttgtgagtttgatccgaatataacaaata 4863949  T
Q  131 aaggtgatagagtttttcagat 152  Q
    ||||||||||||  ||||||||    
T  4863948 aaggtgatagagcctttcagat 4863927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 43 - 155
Target Start/End: Complemental strand, 4643785 - 4643673
Alignment:
Q  43 aatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagag 142  Q
    |||||||||||||||||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||| |  ||| |  ||||||||||||||||    
T  4643785 aatgtaacttggaattttgaggttgattctggttttacttatatggtaaggttacatttttgtgagtttgatccggatataacaaataaaggtgatagag 4643686  T
Q  143 tttttcagatatt 155  Q
    | |||||||||||    
T  4643685 tctttcagatatt 4643673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 4672793 - 4672675
Alignment:
Q  40 tataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgata 139  Q
    ||||||||||||||||||||  | |||||||||  ||| |||||||||||||||||||||||||||||||||||   ||||||||  |||| ||||||||    
T  4672793 tataatgtaacttggaattttgaggttgattcttctttcacttatatggtaaggttacatttttgtgagtttgacaggcttatcattaatacaggtgata 4672694  T
Q  140 gagtttttcagatatttat 158  Q
    |||  |||||||| |||||    
T  4672693 gagcctttcagatttttat 4672675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 4631064 - 4630971
Alignment:
Q  20 gaatggatgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttga 113  Q
    |||||||||  ||| ||||||| |||||||||||||||||  |||||||||||  |||||||||||||||||| ||||||||||||||||||||    
T  4631064 gaatggatgcaacaaaggattacaatgtaacttggaattttgaagttgattcttcttttacttatatggtaagattacatttttgtgagtttga 4630971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 18925700 - 18925875
Alignment:
Q  20 gaatggatgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgct 119  Q
    ||||||||| |||| |||||||||||||||||||||||||  |||||||||||   ||||||||| ||||||| || |||||||| |||||||||  ||     
T  18925700 gaatggatgcgacaaaggattataatgtaacttggaattttgaagttgattctgcctttacttatttggtaagattgcatttttgcgagtttgattggca 18925799  T
Q  120 tatcaagaataaaggtgatagagtttttcagatatttatcaatgatattttggctgaacaatacgctgatgtgatt 195  Q
    ||| |||||| |||||||||||||||||||||| |||||  |||||| ||||||||||| | | ||||||||||||    
T  18925800 tataaagaatcaaggtgatagagtttttcagatttttatagatgataatttggctgaacgaaatgctgatgtgatt 18925875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University