View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19964_high_6 (Length: 468)
Name: NF19964_high_6
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19964_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 273 - 451
Target Start/End: Original strand, 47096814 - 47096993
Alignment:
| Q |
273 |
ttttggaatggccaagctgctaatcaaagacagaagtagaacaagcacaaatgttagagggacaatgggatatttggcaccagaatggctc-aaaatgca |
371 |
Q |
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| T |
47096814 |
ttttggaatggcaaagctattaatgaatgacagaagtagaacaagcacaaatgttagagggacaatgggatatttggcaccagaatggctcaaaaatgcg |
47096913 |
T |
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| Q |
372 |
cctatcactgcaaaagtggatatctacagctttggtgttctgttgcttgaaatattattttgcagaaggcacattgagtt |
451 |
Q |
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| T |
47096914 |
cctatcactgcaaaagtggatatctacagccttggtgtcatgttgcttgaaatcttattttgcaaaaggcacattgagtt |
47096993 |
T |
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Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 165 - 268
Target Start/End: Original strand, 37464149 - 37464255
Alignment:
| Q |
165 |
ctagcaggtacttaattctgtaattgtaactcttcattccaagtttaacaccatcatac---gaagcatatcactttttgcaagtaaactatagctcaaa |
261 |
Q |
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| T |
37464149 |
ctagcaggtacttaattctgtaattggaactcttcattccaagtttaacaccctcatactttcttgcatatcactttttgcaagtaaactatagctcaaa |
37464248 |
T |
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| Q |
262 |
attaaag |
268 |
Q |
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| T |
37464249 |
attaaag |
37464255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 165 - 277
Target Start/End: Original strand, 49021264 - 49021379
Alignment:
| Q |
165 |
ctagcaggtacttaattctgtaattgtaactcttcattccaagtttaacaccatcatacgaa---gcatatcactttttgcaagtaaactatagctcaaa |
261 |
Q |
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| T |
49021264 |
ctagcatgtacttaattctgtaattgtatctcttcattccatgtttagcaccatcatactttcttgcatatcactttttgcatgtaaactatagctcaaa |
49021363 |
T |
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| Q |
262 |
attaaagcatgttttg |
277 |
Q |
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| T |
49021364 |
attaaagcatgttttg |
49021379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 165 - 271
Target Start/End: Complemental strand, 37589908 - 37589799
Alignment:
| Q |
165 |
ctagcaggtacttaattctgtaattgtaactcttcattccaagtttaacaccatcatac---gaagcatatcactttttgcaagtaaactatagctcaaa |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||| || |
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| T |
37589908 |
ctagcaggtacttaattctgtaattgtaactcttcattccaagtttgacaccatcatactttcttgcatatcactttttgcatgtaacctatagctccaa |
37589809 |
T |
|
| Q |
262 |
attaaagcat |
271 |
Q |
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|||||||||| |
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| T |
37589808 |
attaaagcat |
37589799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 165 - 277
Target Start/End: Complemental strand, 37426977 - 37426862
Alignment:
| Q |
165 |
ctagcaggtacttaattctgtaattgtaactcttcattccaagtttaacaccatcatacgaa---gcatatcactttttgcaagtaaactatagctcaaa |
261 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
37426977 |
ctagcatgtacttaattctgtaattgtatctcttcattccatgtttagcaccatcatactttcttgcatatcactttttgcatgtaaactatagctcaaa |
37426878 |
T |
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| Q |
262 |
attaaagcatgttttg |
277 |
Q |
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| T |
37426877 |
attaaagcatgttttg |
37426862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 28182480 - 28182550
Alignment:
| Q |
8 |
ttttttaaaatgatttgcatattcattatgcattttgg-tatacatattgtatcagactttttcctttgaa |
77 |
Q |
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| T |
28182480 |
ttttttaaaatgatttacatattcattatacattttggccatacacattgtatcagaattttttctttgaa |
28182550 |
T |
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