View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19964_low_10 (Length: 427)
Name: NF19964_low_10
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19964_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 30551761 - 30551348
Alignment:
| Q |
1 |
tgatggttccatattgctattgaaaacttctcaagtacaggtacttgtaaactaatgttttgtgttgttggccattcacaccctctagcttcaaacactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30551761 |
tgatggttccatattgctattgaaaacttctcaagtacaggtacttgtaaactaatgttttgtgttgttggccattcacaccctctagcttcaaacactt |
30551662 |
T |
|
| Q |
101 |
tgagaatcgggaaattgagagttatatctttcgaacaagtgggcgaatcactcactaatttaaccccagaaaagctaagtttttgaaggttttggaggca |
200 |
Q |
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| T |
30551661 |
tgagaatcgggaaattgagagttatatctttcgaacaagtgggcgaatcactcactaatttaaccccagaaaagctaagtttttgaaggttttggaggca |
30551562 |
T |
|
| Q |
201 |
aacagatatgggaagactaagagtacatctcatttgaagcgtcaattcgactaaagaattgcagcttaaaagagaatcggaaggaaggaaaactttatca |
300 |
Q |
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| T |
30551561 |
aacagatatgggaagactaagagtacatctcatttgaagcgtcaaatcgactagagaattgcagcgaaaaagtgaatcggaaggaaggaaaactttatca |
30551462 |
T |
|
| Q |
301 |
gcatattgaatatgaagcttttgaactctcctttctaggataaaggaaatccattcacttaacttagatgcatcatattcatgactagttaagcaaagag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| |
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| T |
30551461 |
gcatattgaatatgaagcttttgaactctcctttctaggataaaggaaatccattcacttaacttagatgcatcatattgatggctagttaaggaaagag |
30551362 |
T |
|
| Q |
401 |
agaaactttggatg |
414 |
Q |
| |
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|||||||||||||| |
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| T |
30551361 |
agaaactttggatg |
30551348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 219 - 414
Target Start/End: Complemental strand, 30560252 - 30560054
Alignment:
| Q |
219 |
aagagtacatctcatttgaagcgtcaattcgactaaa-gaattgcagcttaaaagagaatcggaaggaaggaaaactttatcagcatattgaatatgaag |
317 |
Q |
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|||| ||||||||||||||||||||||||||| |||| || |||||||| ||||| ||| |||| ||||||||||||||| ||||||||||||||||| |
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| T |
30560252 |
aagaatacatctcatttgaagcgtcaattcgattaaaagatttgcagctaaaaagttaattagaagaaaggaaaactttatcggcatattgaatatgaag |
30560153 |
T |
|
| Q |
318 |
cttttgaactctcctttctaggataaaggaaatccattcactta--acttagatgcatcatattcatgactagttaagcaaagagagaaactttggatg |
414 |
Q |
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||| |||| |||| |||||| ||||||| ||||||||||||||| || ||||| ||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
30560152 |
cttctgaattctcgtttctaagataaagcaaatccattcacttatttctgagatgtatcatatggatgactagttaagcaaagaaagaaactttggatg |
30560054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 5 - 172
Target Start/End: Complemental strand, 30560425 - 30560258
Alignment:
| Q |
5 |
ggttccatattgctattgaaaacttctcaagtacaggtacttgtaaactaatgttttgtgttgttggccattcacaccctctagcttcaaacactttgag |
104 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| |||||||| ||||||||||||||||| |
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| T |
30560425 |
ggttccatattgctatggaaaacttctcaagtaaaggtacttgtaaactaatgttctgtgttgttgaccatttgcaccctctggcttcaaacactttgag |
30560326 |
T |
|
| Q |
105 |
aatcgggaaattgagagttatatctttcgaacaagtgggcgaatcactcactaatttaaccccagaaa |
172 |
Q |
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||| |||||| | ||| |||||||||| ||| || || |||||||||| || |||| |||||||| |
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| T |
30560325 |
aattgggaaactaagatttatatcttttgaataatcggaagaatcactcaacaacttaatcccagaaa |
30560258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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