View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19964_low_13 (Length: 378)
Name: NF19964_low_13
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19964_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 368
Target Start/End: Complemental strand, 40436217 - 40435873
Alignment:
| Q |
19 |
gattgctcctttttgttgcaggtgatcaatgaattaatataaattctcagaacacatagaannnnnnnattccttgtgttgcaatcaatttgttttgttt |
118 |
Q |
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| T |
40436217 |
gattgctcctttttgttgcaggtgatcaatgaattaatataaattctcagaacacatagaatttttttattgcttgtgttgcaatcaatttgttttgttt |
40436118 |
T |
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| Q |
119 |
tatttggttaatgattattgttcagataaaccaaagttcagctagatcaattaatggcattacaacatacatagttgagatagcaaatacatgtgtgaga |
218 |
Q |
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| T |
40436117 |
tatttggttaatgattattgttcagataaaccaaagttcagctagatcaattaatggcattacaacatacatagttgagatagcaaatacatgtgtgaga |
40436018 |
T |
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| Q |
219 |
ggatgcaaaatctctaacataacattcatgttgcttgtggtggtttaagctctgcacattttatcaagccaacaattttcaaacgcctcaataaaaatga |
318 |
Q |
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| T |
40436017 |
ggatgcaaaatctcta-----acattcatgttgcttgtggtggtttaagctctgcacattttatcaaaccaacaattttcaaacgcctcaataaaaatga |
40435923 |
T |
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| Q |
319 |
atgtcttgttaataatggcaagattcttcaaaatggaggcattgtttctt |
368 |
Q |
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| T |
40435922 |
atgtcttgttaataatggcaagattcttcaaaatggaggcattgtttctt |
40435873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 166 - 331
Target Start/End: Complemental strand, 40432456 - 40432296
Alignment:
| Q |
166 |
caattaatggcattacaacatacatagttgagatagcaaatacatgtgtgagaggatgcaaaatctctaacataacattcatgttgcttgtggtggttta |
265 |
Q |
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| T |
40432456 |
caatgaatggcattccaacacacacagttgaaatatcaaatacatgtttgagaggatgcaacattt-----ttgacattcatgttgcttgtggcaagttc |
40432362 |
T |
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| Q |
266 |
agctctgcacattttatcaagccaacaattttcaaacgcctcaataaaaatgaatgtcttgttaat |
331 |
Q |
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| T |
40432361 |
ggctctgtacgtcttatcaaccctaatattttcaaacgcctcaagtataatgattgtcttgttaat |
40432296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 269 - 349
Target Start/End: Complemental strand, 14473354 - 14473274
Alignment:
| Q |
269 |
tctgcacattttatcaagccaacaattttcaaacgcctcaataaaaatgaatgtcttgttaataatggcaagattcttcaa |
349 |
Q |
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| T |
14473354 |
tctgcacattttatcaacccaacaattttcaaacgcctcaataataaggattgtcttgttaataatggcaagactcttcaa |
14473274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 349
Target Start/End: Complemental strand, 40912753 - 40912682
Alignment:
| Q |
278 |
tttatcaagccaacaattttcaaacgcctcaataaaaatgaatgtcttgttaataatggcaagattcttcaa |
349 |
Q |
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| T |
40912753 |
tttatcaacccaacaattttcaaacacctcaataataatgattttcatgtgaataatggcaatactcttcaa |
40912682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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