View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19964_low_16 (Length: 353)
Name: NF19964_low_16
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19964_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 21 - 342
Target Start/End: Complemental strand, 39082172 - 39081851
Alignment:
| Q |
21 |
ctaccatcaattgttttgaaagagttcatgagaagatccatctttagtttgatcaccatgtcatgcttgaaaatgatccataaaggctcttgttggataa |
120 |
Q |
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| T |
39082172 |
ctaccatcaattgttttgaaagaattcatgagaagatccatctttagtttgatcaccatgtcatgcttgaaaatgatccataaaggctcttgttggataa |
39082073 |
T |
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| Q |
121 |
cagcatgtcttaatgttcctggcttaggattcacagggtcatcacttgagtcaatgaccatgtaatattttccatctttacctccaattgcacgtctacc |
220 |
Q |
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| T |
39082072 |
cagcatgtcttaatgttcctggcttaggattcacagggtcatcacttgagtcaatgaccatgtaatattttccatctttacctccaattgcacgtctacc |
39081973 |
T |
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| Q |
221 |
gaacccaatagcacattctgctagtctcttgcggttattttcccaattggggtcacatctccaacaatcatcaattggattgtttgtaccacaagcatca |
320 |
Q |
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| T |
39081972 |
gaacccaatagcacattctgctagtctcttgcggttgttttcccaattggggtcacatctccaacaatcatcaattggattgtttgtaccacaagcatca |
39081873 |
T |
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| Q |
321 |
taataacccagttttcttctgt |
342 |
Q |
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|||||||||||||||||||||| |
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| T |
39081872 |
taataacccagttttcttctgt |
39081851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 39075723 - 39075588
Alignment:
| Q |
21 |
ctaccatcaattgttttgaaagagttcatgagaagatccatctttagtttgatcaccatgtcatgcttgaaaatgatccataaaggctcttgttggataa |
120 |
Q |
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| T |
39075723 |
ctaccatcaattgttttgaaagaattcatcattagctcttgtttaagcttaataaccatgtcacgcttgaagattatccacaatggttcttcttgaataa |
39075624 |
T |
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| Q |
121 |
cagcatgtcttaatgttcctggcttaggattcacag |
156 |
Q |
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| T |
39075623 |
caccatatcttaatgttcctggctttggattcacag |
39075588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 34288696 - 34288724
Alignment:
| Q |
21 |
ctaccatcaattgttttgaaagagttcat |
49 |
Q |
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| T |
34288696 |
ctaccatcaattgttttgaaagagttcat |
34288724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 217 - 298
Target Start/End: Complemental strand, 43130958 - 43130877
Alignment:
| Q |
217 |
taccgaacccaatagcacattctgctagtctcttgcggttattttcccaattggggtcacatctccaacaatcatcaattgg |
298 |
Q |
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| T |
43130958 |
taccgaacccaattgcacaatctgctagcctttgtctgtttttttcccagtttgggtcacatctccaacaatcatcaattgg |
43130877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 298
Target Start/End: Original strand, 7593834 - 7593940
Alignment:
| Q |
192 |
ccatctttacctccaattgcacgtctaccgaacccaatagcacattctgctagtctcttgcggttattttcccaattggggtcacatctccaacaatcat |
291 |
Q |
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|||| |||||| ||||||||| | | || || ||||| ||||| || |||||||| | ||||| || |||||||| |||||||||||||||||||||| |
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| T |
7593834 |
ccatttttaccaccaattgcatcttttccaaatccaattgcacaatcagctagtctttgtcggttgttctcccaatttgggtcacatctccaacaatcat |
7593933 |
T |
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| Q |
292 |
caattgg |
298 |
Q |
| |
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||||||| |
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| T |
7593934 |
caattgg |
7593940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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