View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19964_low_20 (Length: 331)
Name: NF19964_low_20
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19964_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 28 - 303
Target Start/End: Original strand, 31918852 - 31919128
Alignment:
| Q |
28 |
aacaaactcaggtaattcaattctca-acacatccacattcatcaaattccattcccaaaatgcttctattaacttttcttttcatgccccaattatttt |
126 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31918852 |
aacaaactcaggtaattcaattctcacacacatccacattcatcaaattccattcccaaaatgcttctattaacttttcttttcatgccccaattatttt |
31918951 |
T |
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| Q |
127 |
cagacgaacaatctcaaacgagtatcaaacgcatttcaagaaaaaccagtcatggattcaacttgatacaatctcatgtaatccacgatgaacgtggtac |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31918952 |
cagacgaacaatctcaaacgagtatcaaacgcatttcaagaaaaaccagtcatggattcaacttgatacaatctcatgtaatccacgatgaacgtggtac |
31919051 |
T |
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| Q |
227 |
ttcaaacaattgcaaagatgctcgtgtttgttacactttaccaatccccgatactcctcaactggttttgaggtcag |
303 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31919052 |
ttcaaacaattacaaagatgctcgtgtttgttacactttaccaatccccgatactcctcaactgtttttgaggtcag |
31919128 |
T |
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