View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19964_low_22 (Length: 312)
Name: NF19964_low_22
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19964_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 16750431 - 16750140
Alignment:
| Q |
1 |
ataaagttattgttgaacactgacatcgatgtcaaaggaaatgtttcagttatttccatcattggaattggaggacttggaaagaccgcagttgctcaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
16750431 |
ataaagttattgttgaacactgacatcgatgtcaaaggaaatgtttcagttatttccatcattggaattggaggacttggaaagaccgca-ttgctcaac |
16750333 |
T |
|
| Q |
101 |
gtgtgtacaatgataaaaccgttcaacagcattttgaattgaaaaagtgggtgtgtgttgctgacgatgattctgaagtgaaaggttttgatgtagaagg |
200 |
Q |
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|||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16750332 |
ttgtgtaca-tgataagaccgttcaacaacattttgaattgaaaaagtgggtgtgtgttgctgacgatgattctgaagtgaaaggttttgatgtagaagg |
16750234 |
T |
|
| Q |
201 |
tattgctgcaaagatcttagaatctaagactcgtgatgagatggatcgcaagtgcaacaagaactccgtacaaaaattgacggaaatagatatttg |
296 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16750233 |
tattgctgctaagatcttagaatctaagactcgtgatgagatggat--caagtgcaacaagaactccgtacaaaaattgacggaaatagatatttg |
16750140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 40 - 164
Target Start/End: Complemental strand, 7129095 - 7128971
Alignment:
| Q |
40 |
aatgtttcagttatttccatcattggaattggaggacttggaaagaccgcagttgctcaacgtgtgtacaatgataaaaccgttcaacagcattttgaat |
139 |
Q |
| |
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||||||||| ||||||| || |||||||||||||||||||||||||| ||| ||||||||| ||| |||||||| ||| || ||||| |||||||| | |
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| T |
7129095 |
aatgtttcaattatttctataattggaattggaggacttggaaagactgcacttgctcaacttgtatacaatgacaaagaagtgcaacaacattttgagt |
7128996 |
T |
|
| Q |
140 |
tgaaaaagtgggtgtgtgttgctga |
164 |
Q |
| |
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||||||| ||||| |||||| |||| |
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| T |
7128995 |
tgaaaaaatgggtttgtgtttctga |
7128971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 40 - 164
Target Start/End: Original strand, 7482043 - 7482167
Alignment:
| Q |
40 |
aatgtttcagttatttccatcattggaattggaggacttggaaagaccgcagttgctcaacgtgtgtacaatgataaaaccgttcaacagcattttgaat |
139 |
Q |
| |
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||||||||| ||||||| || |||||||||||||||||||||||||| ||| ||||||||| ||| |||||||| ||| || ||||| |||||| | | |
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| T |
7482043 |
aatgtttcaattatttctataattggaattggaggacttggaaagactgcacttgctcaacttgtatacaatgacaaagaagtgcaacaacattttcagt |
7482142 |
T |
|
| Q |
140 |
tgaaaaagtgggtgtgtgttgctga |
164 |
Q |
| |
|
||||||||||||| |||||| |||| |
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|
| T |
7482143 |
tgaaaaagtgggtttgtgtttctga |
7482167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 164
Target Start/End: Original strand, 7520112 - 7520236
Alignment:
| Q |
40 |
aatgtttcagttatttccatcattggaattggaggacttggaaagaccgcagttgctcaacgtgtgtacaatgataaaaccgttcaacagcattttgaat |
139 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||| ||| |||||||| ||| |||||||| || | || ||| | |||||||| | |
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| T |
7520112 |
aatgtttcagttatttctataattggaattggaggacttggaaagactgcacttgctcaatttgtatacaatgacaagaaagtgcaagaacattttgagt |
7520211 |
T |
|
| Q |
140 |
tgaaaaagtgggtgtgtgttgctga |
164 |
Q |
| |
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| ||||| ||||| |||||| |||| |
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|
| T |
7520212 |
ttaaaaaatgggtttgtgtttctga |
7520236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 164
Target Start/End: Original strand, 7528162 - 7528286
Alignment:
| Q |
40 |
aatgtttcagttatttccatcattggaattggaggacttggaaagaccgcagttgctcaacgtgtgtacaatgataaaaccgttcaacagcattttgaat |
139 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||| ||| |||||||| ||| |||||||| || | || ||| | |||||||| | |
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| T |
7528162 |
aatgtttcagttatttctataattggaattggaggacttggaaagactgcacttgctcaatttgtatacaatgacaagaaagtgcaagaacattttgagt |
7528261 |
T |
|
| Q |
140 |
tgaaaaagtgggtgtgtgttgctga |
164 |
Q |
| |
|
| ||||| ||||| |||||| |||| |
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| T |
7528262 |
ttaaaaaatgggtttgtgtttctga |
7528286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 164
Target Start/End: Complemental strand, 7722369 - 7722245
Alignment:
| Q |
40 |
aatgtttcagttatttccatcattggaattggaggacttggaaagaccgcagttgctcaacgtgtgtacaatgataaaaccgttcaacagcattttgaat |
139 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||| |||||||| || ||||||||| ||| ||| || ||| || ||||| |||||||| | |
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| T |
7722369 |
aatgtttcagttatttctataattggaattggaggactcggaaagactgcgcttgctcaacttgtatacggcgacaaagaagtgcaacaacattttgagt |
7722270 |
T |
|
| Q |
140 |
tgaaaaagtgggtgtgtgttgctga |
164 |
Q |
| |
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||||||| ||||| |||||| |||| |
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| T |
7722269 |
tgaaaaaatgggtttgtgtttctga |
7722245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 7714082 - 7714036
Alignment:
| Q |
40 |
aatgtttcagttatttccatcattggaattggaggacttggaaagac |
86 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||||||||||| |
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| T |
7714082 |
aatgtttcagttatttctataattggaatcggaggacttggaaagac |
7714036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 7482171 - 7482231
Alignment:
| Q |
186 |
ttttgatgtagaaggtattgctgcaaagatcttagaatctaagactcgtgatgagatggat |
246 |
Q |
| |
|
|||||||||| |||||||||| |||||||| |||||||||| ||| ||||||||||||| |
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|
| T |
7482171 |
ttttgatgtaaaaggtattgcatcaaagatcatagaatctaaaactaatgatgagatggat |
7482231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 164
Target Start/End: Original strand, 7494445 - 7494569
Alignment:
| Q |
40 |
aatgtttcagttatttccatcattggaattggaggacttggaaagaccgcagttgctcaacgtgtgtacaatgataaaaccgttcaacagcattttgaat |
139 |
Q |
| |
|
||||||||||||||||| || |||||||| |||||||| || ||||| || |||||||| ||| |||||||| || | || |||| |||||||| | |
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| T |
7494445 |
aatgtttcagttatttctataattggaatcggaggactggggaagactgcgcttgctcaatttgtatacaatgacaagaaagtgaaacaacattttgagt |
7494544 |
T |
|
| Q |
140 |
tgaaaaagtgggtgtgtgttgctga |
164 |
Q |
| |
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| ||||| ||||| |||||| |||| |
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|
| T |
7494545 |
ttaaaaaatgggtttgtgtttctga |
7494569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 7722241 - 7722185
Alignment:
| Q |
186 |
ttttgatgtagaaggtattgctgcaaagatcttagaatctaagactcgtgatgagat |
242 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| |||||||||| ||| ||| |||||| |
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|
| T |
7722241 |
ttttgatgtaaaaggtattgcttcaaagatcatagaatctaaaactagtgttgagat |
7722185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 7128967 - 7128926
Alignment:
| Q |
186 |
ttttgatgtagaaggtattgctgcaaagatcttagaatctaa |
227 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| |||||||||| |
|
|
| T |
7128967 |
ttttgatgtaaaaggtattgctgcaaaaatcatagaatctaa |
7128926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 7528290 - 7528331
Alignment:
| Q |
186 |
ttttgatgtagaaggtattgctgcaaagatcttagaatctaa |
227 |
Q |
| |
|
|||||||||| |||||||||||||||||||| || ||||||| |
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|
| T |
7528290 |
ttttgatgtaaaaggtattgctgcaaagatcataaaatctaa |
7528331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 246
Target Start/End: Original strand, 7520240 - 7520300
Alignment:
| Q |
186 |
ttttgatgtagaaggtattgctgcaaagatcttagaatctaagactcgtgatgagatggat |
246 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||| | ||| || |||||||||| |
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|
| T |
7520240 |
ttttgatgtaaaaggtattgctgcaaagatcacagaatctcaaactaatgttgagatggat |
7520300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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