View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19964_low_24 (Length: 299)
Name: NF19964_low_24
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19964_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 2 - 284
Target Start/End: Original strand, 29052757 - 29053041
Alignment:
| Q |
2 |
ataaactaggttacatcataatctaaagataaagagaggggaatattgcacctattttgaaagtatttttgcagaggatgaaaggaaagtagttatgact |
101 |
Q |
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| T |
29052757 |
ataaactaggttacatcataatctaaagataaagagagggaaatattgcacctattttcaaagtatttttgcagaggatgaaaggaaagtagttatgact |
29052856 |
T |
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| Q |
102 |
attattttctttagtttgataccattataaagatgaacatctaagagacttggttggaataccaaagtggaaagggtgcaaagcttgaacacataatatt |
201 |
Q |
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| T |
29052857 |
attattttctttagtttgataccattataaagatgaacatctaagagacttggttggaataccaaagtggacagggtgcaaagcttgaacacataatatt |
29052956 |
T |
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| Q |
202 |
catcataaatcatacttaaacatatatgtttcaaaattcacatgaaaacggtct--caactaccaagttttcccctcgttaagat |
284 |
Q |
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| T |
29052957 |
catcattattcatacttaaacatgtatgtttaaaaattcacatgaaaacggtctcacaactaccaagttttcccctcgttaagat |
29053041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 29057381 - 29057440
Alignment:
| Q |
61 |
aaagtatttttgcagaggatgaaaggaaagtagttatgactattattttctttagtttga |
120 |
Q |
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| T |
29057381 |
aaagcatttttgcagaggatgaaaggaaaatacttataactatcattttgtttagtttga |
29057440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 33900678 - 33900616
Alignment:
| Q |
27 |
aagataaagagaggggaatattgcacctattttgaaagtatttttgcagaggatgaaaggaaa |
89 |
Q |
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| T |
33900678 |
aagatgaagagagggaaattcttcacctattttgaaagcatttttgtagaggatgaaaggaaa |
33900616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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