View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19964_low_29 (Length: 251)
Name: NF19964_low_29
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19964_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 39581727 - 39581502
Alignment:
| Q |
11 |
atactaccaatttggacctcatgaatttccatggccctggaaagagatatttagactttggtgccttttcattttggctgcattattatcagcttcttaa |
110 |
Q |
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| T |
39581727 |
atactaccaatttggacctcatgaatttccatggccctggaaagagatatttagactttggtgccttttcattttggctgcattattatcagcttcttaa |
39581628 |
T |
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| Q |
111 |
ttcatcctccacagcatttgaataaataaataaattattataataagtgcgtcgaaaatccaaaccaaccaatcatgttttaacgtacagggaacttcca |
210 |
Q |
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| T |
39581627 |
ttcatcctccacagcatttgaataaataaataaattattataataagtgcgtcgaaaatccaaaccaaccaatcatgttttaacgtacagggaacttcca |
39581528 |
T |
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| Q |
211 |
tttttcatgtctcaaatagctccaat |
236 |
Q |
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| T |
39581527 |
tttttcatgtctcaaatagctccaat |
39581502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 131 - 228
Target Start/End: Complemental strand, 39571871 - 39571774
Alignment:
| Q |
131 |
aataaataaataaattattataataagtgcgtcgaaaatccaaaccaaccaatcatgttttaacgtacagggaacttccatttttcatgtctcaaata |
228 |
Q |
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| T |
39571871 |
aataaataaacaaattattatattaagtgcgtctaaaaccaaaactaaccaatcacatttgaacgtacagggaactttcatttttcatgtctcaaata |
39571774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 197
Target Start/End: Complemental strand, 39577122 - 39576983
Alignment:
| Q |
61 |
ttagactttggtgccttttcattttggctgcattattatcagcttcttaattcatcctccacagcatt----tgaataaataaataaattattataataa |
156 |
Q |
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| T |
39577122 |
ttagactctagtgcctttccattttgt-tgcattattagctgcttcttaattcattctccgcagcattgaattgaacaaataaataaattattataataa |
39577024 |
T |
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| Q |
157 |
gtgcgtcgaaaatccaaaccaaccaatcatgttttaacgta |
197 |
Q |
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| T |
39577023 |
atgtatctaaaatcctaactaaccaatcacgtcttaacgta |
39576983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 39582290 - 39582234
Alignment:
| Q |
138 |
aaataaattattataataagtgcgtcgaaaatccaaaccaaccaatcatgttttaac |
194 |
Q |
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| T |
39582290 |
aaataaattattatattaagtgcatctataatccaaaccaaccaatcacgttttaac |
39582234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 39513182 - 39513124
Alignment:
| Q |
81 |
attttggctgcattattatcagcttcttaattcatcctccacagcatttgaataaataa |
139 |
Q |
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| T |
39513182 |
attttggctgcattattagcagcctcttaattcattttcagcagcatttaaataaataa |
39513124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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