View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19964_low_30 (Length: 251)

Name: NF19964_low_30
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19964_low_30
NF19964_low_30
[»] chr6 (11 HSPs)
chr6 (172-251)||(16870808-16870887)
chr6 (178-251)||(16655258-16655331)
chr6 (112-161)||(16871005-16871054)
chr6 (172-232)||(16524443-16524503)
chr6 (175-226)||(5822075-5822126)
chr6 (172-232)||(4032051-4032111)
chr6 (172-232)||(4988007-4988067)
chr6 (186-232)||(5121491-5121537)
chr6 (172-230)||(21964019-21964077)
chr6 (173-230)||(15830760-15830817)
chr6 (172-232)||(21542484-21542544)
[»] chr4 (17 HSPs)
chr4 (173-251)||(32410393-32410471)
chr4 (172-251)||(8013098-8013177)
chr4 (172-247)||(37911948-37912023)
chr4 (173-232)||(29511490-29511549)
chr4 (172-251)||(47516200-47516279)
chr4 (172-232)||(35310770-35310830)
chr4 (172-230)||(5483308-5483366)
chr4 (172-230)||(28142652-28142710)
chr4 (178-251)||(5064664-5064737)
chr4 (172-228)||(1585379-1585435)
chr4 (172-212)||(23532555-23532595)
chr4 (172-232)||(41414639-41414699)
chr4 (172-232)||(42915594-42915654)
chr4 (172-231)||(26916389-26916448)
chr4 (172-226)||(40553833-40553887)
chr4 (172-232)||(2229311-2229371)
chr4 (172-232)||(4058779-4058839)
[»] chr3 (12 HSPs)
chr3 (178-251)||(25242153-25242226)
chr3 (172-232)||(21214305-21214365)
chr3 (172-251)||(22455983-22456062)
chr3 (172-251)||(22479029-22479108)
chr3 (172-251)||(46918188-46918267)
chr3 (180-249)||(30612249-30612318)
chr3 (172-229)||(41936195-41936252)
chr3 (172-232)||(30189641-30189701)
chr3 (172-232)||(38401444-38401504)
chr3 (172-232)||(41476330-41476390)
chr3 (186-230)||(45781474-45781518)
chr3 (192-232)||(53270325-53270365)
[»] chr8 (14 HSPs)
chr8 (172-232)||(5217456-5217516)
chr8 (172-251)||(41362324-41362403)
chr8 (180-232)||(15824673-15824725)
chr8 (172-232)||(17713287-17713347)
chr8 (172-251)||(38072227-38072306)
chr8 (179-249)||(6401691-6401761)
chr8 (172-230)||(29920306-29920364)
chr8 (172-249)||(17336806-17336883)
chr8 (172-232)||(2628200-2628260)
chr8 (172-232)||(8673445-8673505)
chr8 (172-232)||(8712588-8712648)
chr8 (172-232)||(31734179-31734239)
chr8 (172-232)||(36190836-36190896)
chr8 (172-232)||(41086422-41086482)
[»] chr2 (13 HSPs)
chr2 (172-232)||(11030964-11031024)
chr2 (172-232)||(26998383-26998443)
chr2 (172-251)||(32010168-32010247)
chr2 (172-230)||(4891675-4891733)
chr2 (172-232)||(32273737-32273797)
chr2 (172-232)||(33198665-33198725)
chr2 (172-232)||(38071061-38071121)
chr2 (173-230)||(43415468-43415525)
chr2 (172-232)||(3201392-3201452)
chr2 (186-230)||(4033711-4033755)
chr2 (172-232)||(25572111-25572171)
chr2 (172-232)||(28858375-28858435)
chr2 (172-232)||(45660431-45660491)
[»] chr1 (12 HSPs)
chr1 (172-251)||(50176588-50176667)
chr1 (172-226)||(51338938-51338992)
chr1 (172-226)||(51840536-51840590)
chr1 (177-232)||(46803706-46803761)
chr1 (172-249)||(7397772-7397849)
chr1 (172-248)||(16661582-16661657)
chr1 (172-232)||(52841480-52841540)
chr1 (172-230)||(30221791-30221849)
chr1 (172-232)||(12449002-12449062)
chr1 (172-232)||(32624040-32624100)
chr1 (172-232)||(44148871-44148931)
chr1 (173-249)||(44510237-44510313)
[»] scaffold0565 (1 HSPs)
scaffold0565 (178-251)||(5891-5964)
[»] chr5 (12 HSPs)
chr5 (172-229)||(3463853-3463910)
chr5 (172-237)||(12912324-12912389)
chr5 (172-232)||(5369066-5369126)
chr5 (172-232)||(6391935-6391995)
chr5 (173-232)||(8959707-8959766)
chr5 (172-250)||(1144508-1144586)
chr5 (172-248)||(28907135-28907210)
chr5 (172-248)||(28943530-28943605)
chr5 (172-232)||(29307222-29307282)
chr5 (186-237)||(41625541-41625592)
chr5 (186-232)||(16153381-16153427)
chr5 (172-232)||(19413207-19413267)
[»] scaffold0330 (1 HSPs)
scaffold0330 (179-251)||(3241-3313)
[»] chr7 (13 HSPs)
chr7 (177-232)||(33092672-33092727)
chr7 (172-232)||(47779670-47779730)
chr7 (173-232)||(31768996-31769055)
chr7 (172-229)||(22632155-22632212)
chr7 (178-251)||(35887984-35888057)
chr7 (186-230)||(3157511-3157555)
chr7 (172-232)||(6191111-6191171)
chr7 (172-232)||(12632378-12632438)
chr7 (186-230)||(23106528-23106572)
chr7 (172-232)||(29713255-29713315)
chr7 (172-232)||(35084094-35084154)
chr7 (172-232)||(46760291-46760351)
chr7 (186-230)||(47383481-47383525)


Alignment Details
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 16870887 - 16870808
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattactatgt 251  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  16870887 ccaataaaagttgattttaaatctttctatgaaacttattttaaagataacacaaaaaacagtattataaactactatgt 16870808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 16655258 - 16655331
Alignment:
Q  178 aaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattactatgt 251  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||| ||||||||    
T  16655258 aaaattgattttaactctttctatgaaacttattctaaagataacacaataaactatattataaactactatgt 16655331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 16871054 - 16871005
Alignment:
Q  112 aataggaggaccaaaaggtatattcatgtctgctataaaatactctctcc 161  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  16871054 aataggaggaccaaaaggtgtattcatgtctactataaaatactctctcc 16871005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 16524443 - 16524503
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| ||||| |||| |||||||||| |||||||||||||||||||    
T  16524443 ccaatgaaaattgtttttacatcttcctataaaacttatttcaaagataacacaaaaaact 16524503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 5822126 - 5822075
Alignment:
Q  175 ataaaaattgattttaaatctttctatgaaacttattttaaagataacacaa 226  Q
    |||||||||| ||||| ||||||||||||||||||||  |||||||||||||    
T  5822126 ataaaaattgtttttacatctttctatgaaacttattccaaagataacacaa 5822075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 4032051 - 4032111
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| ||||| | || |||||||||| |||||||||||||||||||    
T  4032051 ccaatgaaaattgtttttacatcttccgataaaacttatttcaaagataacacaaaaaact 4032111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 4988007 - 4988067
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||  ||||| ||||| |||| |||||||||| |||||||||||||||||||    
T  4988007 ccaatgaaaattatttttacatcttcctataaaacttatttcaaagataacacaaaaaact 4988067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 5121537 - 5121491
Alignment:
Q  186 ttttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| |||||||||||||||| || |||||||||||||    
T  5121537 ttttacatctttccatgaaacttattttaaggagaacacaaaaaact 5121491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 21964019 - 21964077
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaa 230  Q
    ||||||||||||  ||||| ||||||| || ||||||||||||| || |||||||||||    
T  21964019 ccaataaaaattatttttacatctttccataaaacttattttaaggagaacacaaaaaa 21964077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 15830760 - 15830817
Alignment:
Q  173 caataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaa 230  Q
    |||| ||||||  ||||| ||||| |||| |||||||||||||| |||||||||||||    
T  15830760 caatgaaaattttttttacatcttcctattaaacttattttaaaaataacacaaaaaa 15830817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 21542484 - 21542544
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||||||||||| ||||| ||||| |||| |||||| ||  ||||| |||||||||||||    
T  21542484 ccaataaaaattgtttttacatcttcctataaaactttttccaaagaaaacacaaaaaact 21542544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 173 - 251
Target Start/End: Original strand, 32410393 - 32410471
Alignment:
Q  173 caataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattactatgt 251  Q
    |||| ||||||  ||||| ||||| |||| |||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  32410393 caatgaaaattatttttacatcttcctataaaacttatttcaaagataacacaaaaaactttattataaactactatgt 32410471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 8013177 - 8013098
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattactatgt 251  Q
    ||||||||||||| ||||| ||||||||||||||||||||| || |||||||||| ||||| | ||| ||| ||||||||    
T  8013177 ccaataaaaattgtttttacatctttctatgaaacttatttcaaggataacacaagaaactatgttacaaactactatgt 8013098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 37911948 - 37912023
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattact 247  Q
    ||||| ||||||| ||||| || ||||||| |||||||||||||||||||||||||||||| | ||||||| ||||    
T  37911948 ccaatgaaaattgtttttacatatttctataaaacttattttaaagataacacaaaaaactatgttataaactact 37912023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 29511490 - 29511549
Alignment:
Q  173 caataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    |||| ||||||| ||||| ||||| |||| ||||||||||||||||||||||||||||||    
T  29511490 caatgaaaattgtttttacatcttcctataaaacttattttaaagataacacaaaaaact 29511549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 47516279 - 47516200
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattactatgt 251  Q
    ||||| ||||||| |||||  |||| |||| |||||||||| ||||||||||||||||||| ||||| ||| ||||||||    
T  47516279 ccaatgaaaattgtttttacttcttcctataaaacttatttcaaagataacacaaaaaactatattacaaactactatgt 47516200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 35310830 - 35310770
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| ||||||| |||||||||||| |||||| |||||||||||||    
T  35310830 ccaatgaaaattgtttttacatctttccatgaaacttattctaaagaaaacacaaaaaact 35310770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 5483366 - 5483308
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaa 230  Q
    ||||| ||||||| ||||| ||||| |||| |||||||||||||||| |||||||||||    
T  5483366 ccaatgaaaattgtttttacatcttcctattaaacttattttaaagaaaacacaaaaaa 5483308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 28142710 - 28142652
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaa 230  Q
    ||||| ||||||| ||||| ||| | |||| ||||||||||||||||||||||||||||    
T  28142710 ccaatgaaaattgtttttacatcctcctataaaacttattttaaagataacacaaaaaa 28142652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 5064737 - 5064664
Alignment:
Q  178 aaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattactatgt 251  Q
    ||||||| ||||| ||||| || | |||||||||| ||||||||||||||||| | | ||| ||||||||||||    
T  5064737 aaaattgtttttacatcttcctttaaaacttatttcaaagataacacaaaaaattatgttacaaattactatgt 5064664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 1585435 - 1585379
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaa 228  Q
    ||||||||||||| ||| | ||||||| ||||||||||||| ||||| |||||||||    
T  1585435 ccaataaaaattgttttaacatctttccatgaaacttatttcaaagaaaacacaaaa 1585379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 23532555 - 23532595
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattt 212  Q
    |||||| |||||||||||| |||||||||||||||||||||    
T  23532555 ccaatagaaattgattttacatctttctatgaaacttattt 23532595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 41414699 - 41414639
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||||||||||| ||||| ||||| |||| |||||| ||| ||||| |||||||||||||    
T  41414699 ccaataaaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaact 41414639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 42915594 - 42915654
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| ||||||| ||||||||||||  ||||| |||||||||||||    
T  42915594 ccaatgaaaattgtttttacatctttccatgaaacttattccaaagaaaacacaaaaaact 42915654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 26916389 - 26916448
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaac 231  Q
    ||||||||||||| ||||| ||||| |||| |||||| ||| ||||| ||||||||||||    
T  26916389 ccaataaaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaac 26916448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 40553833 - 40553887
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaa 226  Q
    ||||| ||| ||| ||||| |||||||||||||||||||| ||| ||||||||||    
T  40553833 ccaatgaaacttgtttttacatctttctatgaaacttattctaaggataacacaa 40553887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 2229311 - 2229371
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||||||||||| ||||| ||||| |||| |||||| ||  ||||| |||||||||||||    
T  2229311 ccaataaaaattgtttttacatcttcctataaaactttttccaaagaaaacacaaaaaact 2229371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 4058779 - 4058839
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| ||||| |||| |||||| ||| ||||| |||||||||||||    
T  4058779 ccaatgaaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaact 4058839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 25242226 - 25242153
Alignment:
Q  178 aaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattactatgt 251  Q
    ||||||| ||||  |||||||||| |||||||||||||||||||||||||||||| | ||| ||| ||||||||    
T  25242226 aaaattgttttttcatctttctataaaacttattttaaagataacacaaaaaactatgttacaaactactatgt 25242153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 21214305 - 21214365
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| |||||||||| |||||||||| ||| |||||||||||||||    
T  21214305 ccaatgaaaattgtttttacatctttctataaaacttatttcaaaaataacacaaaaaact 21214365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 22456062 - 22455983
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattactatgt 251  Q
    ||||| ||||||| ||||| ||||| |||| |||||||||| |||| |||||||||||||| | ||| ||| ||||||||    
T  22456062 ccaatcaaaattgtttttatatcttcctataaaacttatttcaaagttaacacaaaaaactatgttacaaactactatgt 22455983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 22479108 - 22479029
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattactatgt 251  Q
    ||||| |||| || ||||| ||||| |||| |||||||||| ||||||||||||||||||| | ||| ||| ||||||||    
T  22479108 ccaatgaaaagtgtttttacatcttcctataaaacttatttcaaagataacacaaaaaactatgttacaaactactatgt 22479029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 46918267 - 46918188
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattactatgt 251  Q
    ||||| ||||||| ||||| ||||| |||| ||||||||||||| |||||||||| ||||| | || |||| ||||||||    
T  46918267 ccaatgaaaattgtttttagatcttcctataaaacttattttaaggataacacaagaaactatgttgtaaactactatgt 46918188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 30612249 - 30612318
Alignment:
Q  180 aattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattactat 249  Q
    ||||| ||||| |||||||||||||||| |||||||||| |||| |||||| | |||  |||||||||||    
T  30612249 aattgtttttacatctttctatgaaactcattttaaagagaacataaaaaattatatcttaaattactat 30612318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 41936252 - 41936195
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaa 229  Q
    ||||| ||||||||||||| ||||| | |||||||||||| |||| | ||||||||||    
T  41936252 ccaattaaaattgattttacatcttcccatgaaacttattctaaataaaacacaaaaa 41936195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 30189641 - 30189701
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| ||||| |||| |||||| ||| ||||| |||||||||||||    
T  30189641 ccaatgaaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaact 30189701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 38401444 - 38401504
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||  ||||| ||||  |||| |||||||||| |||||||||||||||||||    
T  38401444 ccaatgaaaattatttttacatctccctataaaacttatttcaaagataacacaaaaaact 38401504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 41476390 - 41476330
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||  ||||| |||||||||| |||||| ||| ||||| |||||||||||||    
T  41476390 ccaatgaaaattatttttacatctttctataaaacttttttcaaagaaaacacaaaaaact 41476330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 45781474 - 45781518
Alignment:
Q  186 ttttaaatctttctatgaaacttattttaaagataacacaaaaaa 230  Q
    ||||| ||||||| |||||||||||| |||||| |||||||||||    
T  45781474 ttttacatctttccatgaaacttattctaaagagaacacaaaaaa 45781518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 53270325 - 53270365
Alignment:
Q  192 atctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||||||||||||||| ||| ||||| |||||||||||||    
T  53270325 atctttctatgaaacttttttcaaagaaaacacaaaaaact 53270365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 5217456 - 5217516
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||||||||||| ||||| ||||||||||||||||||||| || |||||||||| |||||    
T  5217456 ccaataaaaattgtttttacatctttctatgaaacttatttcaaggataacacaagaaact 5217516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 41362403 - 41362324
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattactatgt 251  Q
    ||||| ||||||| ||||| ||||| |||| |||||||||| ||||||||||||||||||| | ||| ||| ||||||||    
T  41362403 ccaatgaaaattgtttttacatcttcctataaaacttatttcaaagataacacaaaaaactatgttacaaactactatgt 41362324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 15824725 - 15824673
Alignment:
Q  180 aattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||| ||||||| |||||||||||| |||||| |||||||||||||    
T  15824725 aattgtttttacatctttccatgaaacttattctaaagaaaacacaaaaaact 15824673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 17713287 - 17713347
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||||||||| |||| |||||||||| || |||||||||| |||||    
T  17713287 ccaatgaaaattgtttttaaatcttcctataaaacttatttcaaggataacacaagaaact 17713347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 251
Target Start/End: Original strand, 38072227 - 38072306
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattactatgt 251  Q
    ||||| ||||||| ||||| || ||| ||| ||||||| || ||||||||||||||||||| | ||| ||| ||||||||    
T  38072227 ccaatgaaaattgtttttacatttttttataaaacttaattcaaagataacacaaaaaactatgttacaaactactatgt 38072306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 6401691 - 6401761
Alignment:
Q  179 aaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattactat 249  Q
    |||||| ||||| |||||| || ||||||||||| ||  ||||||||||||||| || || ||||||||||    
T  6401691 aaattgtttttacatctttttaggaaacttatttcaagaataacacaaaaaactatactacaaattactat 6401761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 29920364 - 29920306
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaa 230  Q
    ||||| ||||||| ||||| ||||| | ||||||||||||  |||||||||||||||||    
T  29920364 ccaatgaaaattgtttttacatcttcccatgaaacttattccaaagataacacaaaaaa 29920306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 17336806 - 17336883
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattactat 249  Q
    ||||| ||||||| ||||| ||||| |||| ||| |||||| |||||| |||||||||||| | ||| ||| ||||||    
T  17336806 ccaatgaaaattgtttttacatcttcctataaaatttatttcaaagatgacacaaaaaactatgttacaaactactat 17336883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 2628260 - 2628200
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||  ||||| ||||| |||| ||||||||||||| |||||||||| |||||    
T  2628260 ccaatgaaaattatttttacatcttcctataaaacttattttaaggataacacaagaaact 2628200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 8673445 - 8673505
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| |||||  ||| |||||||||| ||| |||||||||||||||    
T  8673445 ccaatgaaaattgtttttacatcttcttataaaacttatttcaaatataacacaaaaaact 8673505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 8712588 - 8712648
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||||||||||| ||||| |||||||||| |||||||||  ||  ||||||||| |||||    
T  8712588 ccaataaaaattgtttttacatctttctataaaacttattccaataataacacaagaaact 8712648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 31734179 - 31734239
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| ||||| |||| |||||| ||| ||||| |||||||||||||    
T  31734179 ccaatgaaaattgtttttatatcttcctataaaacttttttcaaagaaaacacaaaaaact 31734239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 36190836 - 36190896
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| ||||| |||| |||||| ||| ||||| |||||||||||||    
T  36190836 ccaatgaaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaact 36190896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 41086482 - 41086422
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| |||||| ||| |||||| ||| ||||| |||||||||||||    
T  41086482 ccaatgaaaattgtttttacatctttatataaaacttttttcaaagaaaacacaaaaaact 41086422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 11031024 - 11030964
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||||||||||| ||||| |||||||||| ||||||||||||||||||| |||| |||||    
T  11031024 ccaataaaaattgtttttatatctttctataaaacttattttaaagataagacaagaaact 11030964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 26998383 - 26998443
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| ||||| |||| ||||||||||||||||||||||||||||||    
T  26998383 ccaatgaaaattgtttttacatcttcctataaaacttattttaaagataacacaaaaaact 26998443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 251
Target Start/End: Original strand, 32010168 - 32010247
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattactatgt 251  Q
    ||||| ||||||  ||||| ||||| |||| |||||||||| ||||||||||||||||||| ||||| ||| ||||||||    
T  32010168 ccaatgaaaattatttttacatcttcctataaaacttatttcaaagataacacaaaaaactatattacaaactactatgt 32010247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 230
Target Start/End: Complemental strand, 4891733 - 4891675
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaa 230  Q
    ||||||||||||| ||||| ||||| |||| |||||||||| |||||||||||||||||    
T  4891733 ccaataaaaattgtttttacatcttcctataaaacttatttcaaagataacacaaaaaa 4891675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 32273737 - 32273797
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| ||||| |||| |||||||||| |||||||||||||||||||    
T  32273737 ccaatgaaaattgtttttatatcttcctataaaacttatttcaaagataacacaaaaaact 32273797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 33198725 - 33198665
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| ||||| |||| |||||| ||||||||| |||||||||||||    
T  33198725 ccaatcaaaattgtttttacatcttcctataaaacttcttttaaagaaaacacaaaaaact 33198665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 38071061 - 38071121
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| ||||| || | |||||||||| |||||||||||||||||||    
T  38071061 ccaatgaaaattgtttttacatcttcctgtaaaacttatttcaaagataacacaaaaaact 38071121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 43415468 - 43415525
Alignment:
Q  173 caataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaa 230  Q
    |||| ||||||| ||||| ||||| |||| |||||| ||||||||| |||||||||||    
T  43415468 caatgaaaattgtttttacatcttcctataaaactttttttaaagaaaacacaaaaaa 43415525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 3201392 - 3201452
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| |||||||||| |||||| ||  ||||| |||||||||||||    
T  3201392 ccaatgaaaattgtttttacatctttctataaaactttttccaaagaaaacacaaaaaact 3201452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 4033755 - 4033711
Alignment:
Q  186 ttttaaatctttctatgaaacttattttaaagataacacaaaaaa 230  Q
    ||||| ||||||| |||||||||||||||| || |||||||||||    
T  4033755 ttttacatctttccatgaaacttattttaaggagaacacaaaaaa 4033711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 25572111 - 25572171
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| ||||| | ||||||||||||  ||||| |||||||||||||    
T  25572111 ccaatgaaaattgtttttacatcttcccatgaaacttattccaaagaaaacacaaaaaact 25572171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 28858375 - 28858435
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||  ||||| |||||||||| |||||| ||| ||||| |||||||||||||    
T  28858375 ccaatgaaaattatttttacatctttctataaaacttttttcaaagaaaacacaaaaaact 28858435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 45660431 - 45660491
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| ||||| |||| |||||| ||| ||||| |||||||||||||    
T  45660431 ccaatgaaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaact 45660491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 251
Target Start/End: Original strand, 50176588 - 50176667
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattactatgt 251  Q
    ||||||||||||| ||||| ||||| |||| ||| |||||| ||||||||||||||||||| | ||| ||| ||||||||    
T  50176588 ccaataaaaattgtttttacatcttcctataaaatttatttcaaagataacacaaaaaactatgttacaaactactatgt 50176667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 51338992 - 51338938
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaa 226  Q
    ||||| ||||||||||||| ||||||||||||||||||||| ||||| |||||||    
T  51338992 ccaatgaaaattgattttacatctttctatgaaacttatttcaaagacaacacaa 51338938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 51840590 - 51840536
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaa 226  Q
    ||||| ||||||||||||| ||||||||||||||||||||  |||||||||||||    
T  51840590 ccaatgaaaattgattttatatctttctatgaaacttattccaaagataacacaa 51840536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 46803761 - 46803706
Alignment:
Q  177 aaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    |||||||| ||||| ||||||||||||||||||||  || ||||||||||||||||    
T  46803761 aaaaattgtttttacatctttctatgaaacttattgcaaggataacacaaaaaact 46803706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 7397772 - 7397849
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattactat 249  Q
    ||||| ||||||| ||||| ||||| |||| ||| |||||| ||||||||||||||||||| | ||| ||| ||||||    
T  7397772 ccaatgaaaattgtttttacatcttcctataaaatttatttcaaagataacacaaaaaactatgttacaaactactat 7397849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 16661582 - 16661657
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattacta 248  Q
    ||||||||||||| ||||| ||| | |||| |||||||||| ||||||||||||||||| | | ||| |||||||||    
T  16661582 ccaataaaaattgtttttacatcctcctat-aaacttatttcaaagataacacaaaaaaatatgttacaaattacta 16661657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 52841540 - 52841480
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||| | |||||||||||||||||||||||| ||||| |||| |||||    
T  52841540 ccaatgaaaattgttttaacatctttctatgaaacttattttaaggataagacaagaaact 52841480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 230
Target Start/End: Original strand, 30221791 - 30221849
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaa 230  Q
    |||||||||| || ||||| ||||| | || |||||||||||||||| |||||||||||    
T  30221791 ccaataaaaaatgtttttacatcttcccataaaacttattttaaagaaaacacaaaaaa 30221849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 12449062 - 12449002
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| ||||| |||| |||||| ||| ||||| |||||||||||||    
T  12449062 ccaatgaaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaact 12449002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 32624100 - 32624040
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| ||||| |||| |||||| ||| ||||| |||||||||||||    
T  32624100 ccaatgaaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaact 32624040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 44148931 - 44148871
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| ||||| | ||||||||||||  ||||| |||||||||||||    
T  44148931 ccaatgaaaattgtttttacatcttcccatgaaacttattccaaagaaaacacaaaaaact 44148871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 44510313 - 44510237
Alignment:
Q  173 caataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattactat 249  Q
    |||| ||||||| ||||| | ||| |||| ||| |||||| ||| ||||||||||||||| | ||||||| ||||||    
T  44510313 caatgaaaattgtttttacaacttcctataaaatttatttcaaaaataacacaaaaaactatgttataaactactat 44510237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 5964 - 5891
Alignment:
Q  178 aaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattactatgt 251  Q
    ||||||| ||||| ||||| |||| |||||||||| || |||||||||||||||| ||||| ||| ||||||||    
T  5964 aaaattgtttttacatcttcctataaaacttatttcaatgataacacaaaaaactatattacaaactactatgt 5891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 3463910 - 3463853
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaa 229  Q
    ||||||||||||| ||||| ||||| |||| |||||||||| ||||||||||||||||    
T  3463910 ccaataaaaattgtttttatatcttcctataaaacttatttcaaagataacacaaaaa 3463853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 12912389 - 12912324
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttatt 237  Q
    ||||| ||||||| ||||| ||||| |||| |||||||||| ||||||||||||||||||| ||||    
T  12912389 ccaatgaaaattgtttttacatcttcctataaaacttatttcaaagataacacaaaaaactatatt 12912324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 5369126 - 5369066
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| ||||| |||| |||||||||||||| |||||||||||||||    
T  5369126 ccaatgaaaattgtttttacatcttcctataaaacttattttaaaaataacacaaaaaact 5369066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 6391935 - 6391995
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||||||| ||| ||||| ||||||||||||||||||||| |||||| | ||||||||||    
T  6391935 ccaataaaagttgtttttacatctttctatgaaacttatttcaaagatgatacaaaaaact 6391995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 8959707 - 8959766
Alignment:
Q  173 caataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    |||| ||||||| ||||| ||||| |||| |||||||||| |||||||||||||||||||    
T  8959707 caatgaaaattgtttttacatcttcctataaaacttatttcaaagataacacaaaaaact 8959766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 1144586 - 1144508
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattactatg 250  Q
    ||||| ||||||| ||||| || || |||| ||| |||||||||||||||||||||||||| | ||| ||| |||||||    
T  1144586 ccaatgaaaattgtttttacatattcctataaaatttattttaaagataacacaaaaaactatgttacaaactactatg 1144508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 28907135 - 28907210
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattacta 248  Q
    ||||||||||||| ||||| ||| | |||| |||||||||| ||||||||||||||||| | | ||| |||||||||    
T  28907135 ccaataaaaattgtttttacatcctcctat-aaacttatttcaaagataacacaaaaaaatatgttacaaattacta 28907210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 28943530 - 28943605
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattacta 248  Q
    ||||||||||||| ||||| ||| | |||| |||||||||| ||||||||||||||||| | | ||| |||||||||    
T  28943530 ccaataaaaattgtttttacatcctcctat-aaacttatttcaaagataacacaaaaaaatatgttacaaattacta 28943605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 29307282 - 29307222
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||  ||||| ||||| |||| ||||||||||||||||| ||||||||||||    
T  29307282 ccaatgaaaattatttttacatcttcctataaaacttattttaaagattacacaaaaaact 29307222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 41625592 - 41625541
Alignment:
Q  186 ttttaaatctttctatgaaacttattttaaagataacacaaaaaactttatt 237  Q
    ||||| ||||| ||||||||||||||| ||||| ||||||||||||| ||||    
T  41625592 ttttacatcttcctatgaaacttatttcaaagaaaacacaaaaaactatatt 41625541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 16153427 - 16153381
Alignment:
Q  186 ttttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||| |||| |||||||||| |||||||||||||||||||    
T  16153427 ttttacatcttcctataaaacttatttcaaagataacacaaaaaact 16153381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 19413207 - 19413267
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| ||||| | || |||||||||| ||||| |||||||||||||    
T  19413207 ccaatgaaaattgtttttacatcttcccataaaacttatttcaaagaaaacacaaaaaact 19413267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 3241 - 3313
Alignment:
Q  179 aaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattactatgt 251  Q
    |||||| ||||| ||||| |||| |||||||||| ||||||||||||||||||| | ||| ||| ||||||||    
T  3241 aaattgtttttagatcttcctataaaacttatttcaaagataacacaaaaaactatgttacaaactactatgt 3313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 33092727 - 33092672
Alignment:
Q  177 aaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    |||||||| ||||| || ||||||||||||||||||||| |||||||||| |||||    
T  33092727 aaaaattgtttttacatttttctatgaaacttattttaatgataacacaagaaact 33092672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 47779670 - 47779730
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| ||||| | |||||||||||| |||||| |||||||||||||    
T  47779670 ccaatgaaaattgtttttacatcttcccatgaaacttattctaaagaaaacacaaaaaact 47779730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 31769055 - 31768996
Alignment:
Q  173 caataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    |||| ||||||| ||||| ||||| |||| |||||||||| |||||| ||||||||||||    
T  31769055 caatgaaaattgtttttacatcttcctataaaacttatttcaaagatgacacaaaaaact 31768996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 22632155 - 22632212
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaa 229  Q
    ||||| ||||||| ||||| ||||| | ||||||||||||| ||||| ||||||||||    
T  22632155 ccaatgaaaattgtttttacatcttcccatgaaacttatttcaaagaaaacacaaaaa 22632212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 35888057 - 35887984
Alignment:
Q  178 aaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaactttattataaattactatgt 251  Q
    ||||||| ||||| ||||| |||| ||| |||||| ||||||||||||||||| | | ||| ||| ||||||||    
T  35888057 aaaattgtttttacatcttcctataaaagttatttcaaagataacacaaaaaattatgttacaaactactatgt 35887984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 3157511 - 3157555
Alignment:
Q  186 ttttaaatctttctatgaaacttattttaaagataacacaaaaaa 230  Q
    ||||| ||||||| ||||||||||||| ||||| |||||||||||    
T  3157511 ttttacatctttccatgaaacttatttcaaagagaacacaaaaaa 3157555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 6191111 - 6191171
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| ||||| |||| |||||| ||| ||||| |||||||||||||    
T  6191111 ccaatgaaaattgtttttacatcttcctataaaacttttttaaaagaaaacacaaaaaact 6191171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 12632438 - 12632378
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| ||||| ||||||||||| ||| ||||| |||| ||||||||    
T  12632438 ccaatgaaaattgtttttacatcttcctatgaaacttttttcaaagaaaacataaaaaact 12632378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 23106528 - 23106572
Alignment:
Q  186 ttttaaatctttctatgaaacttattttaaagataacacaaaaaa 230  Q
    ||||| ||||||| |||||||||||||||| || |||||||||||    
T  23106528 ttttacatctttccatgaaacttattttaaggagaacacaaaaaa 23106572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 29713255 - 29713315
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| | |||||||||||| ||||| ||||||| |||||| |||||    
T  29713255 ccaatgaaaattgtttttacaactttctatgaaagttattctaaagatgacacaagaaact 29713315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 35084154 - 35084094
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||||| ||||| ||||| |||||| |||||||||||||| ||  | |||||||||||||    
T  35084154 ccaataagaattgtttttacatctttttatgaaacttatttcaagaagaacacaaaaaact 35084094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 46760351 - 46760291
Alignment:
Q  172 ccaataaaaattgattttaaatctttctatgaaacttattttaaagataacacaaaaaact 232  Q
    ||||| ||||||| ||||| ||||| |||| |||||| ||| ||||| |||||||||||||    
T  46760351 ccaatgaaaattgtttttacatcttcctataaaacttttttcaaagaaaacacaaaaaact 46760291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 47383481 - 47383525
Alignment:
Q  186 ttttaaatctttctatgaaacttattttaaagataacacaaaaaa 230  Q
    ||||| ||||||| |||||||||||||||| || |||||||||||    
T  47383481 ttttacatctttccatgaaacttattttaaggagaacacaaaaaa 47383525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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