View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19964_low_33 (Length: 248)
Name: NF19964_low_33
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19964_low_33 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 248
Target Start/End: Complemental strand, 2557367 - 2557123
Alignment:
| Q |
5 |
tagataatactctccatacatctttctgttctcataagggaatgttacaataaacttcttgctctttatagactggacatcatgcacaggaagattgcgg |
104 |
Q |
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| T |
2557367 |
tagattatactctccatacatctttctgttctcataagggaatgttacaataaacttcttgctctttataggctggacatcatgcacaggaagattgcgg |
2557268 |
T |
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| Q |
105 |
cgaagaacttggacaactttt-atggaataataagaaaaaagaactaaacatataaatttttgtagttgaattactacagttcaaaactcttgaagttta |
203 |
Q |
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| T |
2557267 |
cgaagaacttggacaactttttatggaaaaataagaaaaaagaactaaacatataaatttttgtagttgaattactacagttcaaaactcttgaagttta |
2557168 |
T |
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| Q |
204 |
catcttaaatttaacctgtgtaggccaagtatatattctaaacgt |
248 |
Q |
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| T |
2557167 |
catcttaaatttaacctgtgtaggccaagtatatattctaaacgt |
2557123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 2567228 - 2566990
Alignment:
| Q |
5 |
tagataatactctccatacatctttctgttctcataagggaatgttacaataaacttcttgctctttatagactggacatcatgcacaggaagattgcgg |
104 |
Q |
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| T |
2567228 |
tagattatacttttcatacatctttctattctcataagggaatgatacaataaacttcttgcactttgtaggctggacatcatgcacaggaagattgcgg |
2567129 |
T |
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| Q |
105 |
cgaagaacttggacaactt--ttatggaataataagaaaaaagaactaaacatataaatttttgtagttgaattactacagttcaaaactcttgaagttt |
202 |
Q |
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| T |
2567128 |
cgaagaacttggacaacttatttatggaataataagaaaaaagaactgaaaatataaatttttgtagttaaattactacaatttaaaacttttgaagttt |
2567029 |
T |
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| Q |
203 |
acatcttaaatttaacctgtgtaggccaagtatatattc |
241 |
Q |
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| T |
2567028 |
acatctgaaatttaacctgtgtaggccaagtatatattc |
2566990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 3276807 - 3276668
Alignment:
| Q |
19 |
catacatctttctgttctcataagggaatgttacaataaacttcttgctctttatagactggacatcatgcacaggaagattgcggcgaagaacttggac |
118 |
Q |
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| T |
3276807 |
cataaatcttcctattcttacaagggaatgatactatcaacttcttgttctttataggctggacatcatgcgcaggaagattgcagcgaagagcgtggac |
3276708 |
T |
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| Q |
119 |
aact--tttatggaataataag-aaaaaagaactaaacat |
155 |
Q |
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| T |
3276707 |
accttatttatgggatagtatgcaaaaaagaactaaacat |
3276668 |
T |
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