View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19964_low_35 (Length: 231)

Name: NF19964_low_35
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19964_low_35
NF19964_low_35
[»] chr7 (14 HSPs)
chr7 (20-195)||(4712033-4712208)
chr7 (26-195)||(4845979-4846148)
chr7 (20-201)||(4653476-4653657)
chr7 (20-178)||(4666917-4667075)
chr7 (20-155)||(4636859-4636994)
chr7 (23-155)||(4697151-4697283)
chr7 (62-212)||(4647471-4647619)
chr7 (26-158)||(4662990-4663122)
chr7 (20-216)||(4783793-4783989)
chr7 (20-194)||(4816222-4816396)
chr7 (31-152)||(4863927-4864048)
chr7 (43-155)||(4643673-4643785)
chr7 (40-158)||(4672675-4672793)
chr7 (20-113)||(4630971-4631064)
[»] chr4 (1 HSPs)
chr4 (20-195)||(18925700-18925875)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 4712033 - 4712208
Alignment:
Q  20 gaatggatgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712033 gaatggatgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgct 4712132  T
Q  120 tatcaagaataaaggtgatagagtttttcagatatttatcaatgatattttggctgaacaatacgctgatgtgatt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712133 tatcaagaataaaggtgatagagtttttcagatatttatcaatgatattttggctgaacaatacgctgatgtgatt 4712208  T

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Target: chr7; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 4845979 - 4846148
Alignment:
Q  26 atgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaa 125  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4845979 atgtgacagaggattataatgtaacttggaatttcgaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttaccaa 4846078  T
Q  126 gaataaaggtgatagagtttttcagatatttatcaatgatattttggctgaacaatacgctgatgtgatt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  4846079 gaataaaggtgatagagtttttcagatatttatcaatgatattttggctgaactatatgctgatgtgatt 4846148  T

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Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 4653657 - 4653476
Alignment:
Q  20 gaatggatgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgct 119  Q
    ||||| |||| ||||||||||| |||||||||||||||||| ||||||| || |  |||||||||||||| ||||||||||||||||| ||||||  ||     
T  4653657 gaatgaatgtcacagaggattacaatgtaacttggaatttcgaagttgactcaacatttacttatatggtcaggttacatttttgtgaatttgattggcg 4653558  T
Q  120 tatcaagaataaaggtgatagagtttttcagatatttatcaatgatattttggctgaacaatacgctgatgtgattacatgg 201  Q
    ||||||| ||||||||||||||||||| |||||||||||  ||||| | |||||||||| | | |||||||||||| |||||    
T  4653557 tatcaaggataaaggtgatagagttttccagatatttatacatgatttcttggctgaaccaaatgctgatgtgatttcatgg 4653476  T

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Target: chr7; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 4667075 - 4666917
Alignment:
Q  20 gaatggatgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgct 119  Q
    |||||||||  | |||| |||||||||| || |||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||  ||     
T  4667075 gaatggatgccaaagagaattataatgtgacatggaattttaaagttgattctatttttacttatatggtaaggttgcatttttgtgagtttgattggca 4666976  T
Q  120 tatcaagaataaaggtgatagagtttttcagatatttatcaatgatattttggctgaac 178  Q
    ||||||||||  ||||||||||||||||||||| |||||  |||||||| |||||||||    
T  4666975 tatcaagaatccaggtgatagagtttttcagatttttatagatgatattatggctgaac 4666917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 4636994 - 4636859
Alignment:
Q  20 gaatggatgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgct 119  Q
    ||||| ||| |||| |||||||||||||||||||||| ||  |||||||||||  ||||||||||||||||||||||||||||||||||||||||  ||     
T  4636994 gaatgtatgagacaaaggattataatgtaacttggaactttgaagttgattctgcttttacttatatggtaaggttacatttttgtgagtttgattggca 4636895  T
Q  120 tatcaagaataaaggtgatagagtttttcagatatt 155  Q
    ||||||  |||||||||||||||| |||||||||||    
T  4636894 tatcaactataaaggtgatagagtctttcagatatt 4636859  T

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Target: chr7; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 155
Target Start/End: Original strand, 4697151 - 4697283
Alignment:
Q  23 tggatgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttat 122  Q
    |||||| |||||||||||  |||||||||||||||||| ||||||||  | |||||||||||||||||||||| ||||||||||||||||||| || |||    
T  4697151 tggatgagacagaggatttcaatgtaacttggaatttcgaagttgatgttggttttacttatatggtaaggttgcatttttgtgagtttgatcagcatat 4697250  T
Q  123 caagaataaaggtgatagagtttttcagatatt 155  Q
    ||| |||| |||||||||||| ||||| |||||    
T  4697251 caaaaatataggtgatagagtctttcaaatatt 4697283  T

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Target: chr7; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 62 - 212
Target Start/End: Complemental strand, 4647619 - 4647471
Alignment:
Q  62 aagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagagtttttcagatatttatcaa 161  Q
    ||||||||||| ||||||||||||||||||||||||  |||||||||||||||   | ||| ||||||  |||||||| ||||||||| || |||||  |    
T  4647619 aagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaattcaggtgatacagtttttcatatgtttataga 4647522  T
Q  162 tgatattttggctgaacaatacgctgatgtgattacatgggctggtgctcc 212  Q
    |||||||||||||||||| || |||||||||||| ||||||||||||||||    
T  4647521 tgatattttggctgaacattatgctgatgtgattgcatgggctggtgctcc 4647471  T

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Target: chr7; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 158
Target Start/End: Complemental strand, 4663122 - 4662990
Alignment:
Q  26 atgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaa 125  Q
    ||||||||||||||||||||||||||||||||||  | |||||||||  |||||| || ||||||||||||||||||||||||||||||| |  |||||     
T  4663122 atgtgacagaggattataatgtaacttggaattttgaggttgattcttcttttacatacatggtaaggttacatttttgtgagtttgatccgaatatcat 4663023  T
Q  126 gaataaaggtgatagagtttttcagatatttat 158  Q
     ||||||||||||||| | |||||||| |||||    
T  4663022 aaataaaggtgatagaatgtttcagatttttat 4662990  T

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Target: chr7; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 4783793 - 4783989
Alignment:
Q  20 gaatggatgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgct 119  Q
    ||||| ||| |||||||||||| |||||||||||||| ||  |||||||||||  ||||||||||||||||||||||||||||||||||||||||  ||     
T  4783793 gaatgtatgagacagaggattacaatgtaacttggaactttgaagttgattctgcttttacttatatggtaaggttacatttttgtgagtttgattggca 4783892  T
Q  120 tatcaagaataaaggtgatagagtttttcagatatttatcaatgatattttggctgaacaatacgctgatgtgattacatgggctggtgctcctttg 216  Q
    ||||||  |  | ||||||||| |||||||||| || ||  |||||| ||||||||||||    ||||||||||| |  |||  |||||||||||||    
T  4783893 tatcaaacaggatggtgatagaatttttcagattttcatagatgatagtttggctgaacatgctgctgatgtgataaggtggagtggtgctcctttg 4783989  T

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Target: chr7; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 4816222 - 4816396
Alignment:
Q  20 gaatggatgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgct 119  Q
    ||||| ||| |||||||||||| |||||||||||||| ||  |||||||||||  ||||||||||||||||||||||||||||||||||||||||  ||     
T  4816222 gaatgtatgagacagaggattacaatgtaacttggaactttgaagttgattctgcttttacttatatggtaaggttacatttttgtgagtttgattggca 4816321  T
Q  120 tatcaagaataaaggtgatagagtttttcagatatttatcaatgatattttggctgaacaatacgctgatgtgat 194  Q
    ||||||  |  | ||||||||| |||||||||| || ||  |||||| |||||||||||  |  |||||||||||    
T  4816322 tatcaaacaggatggtgatagaatttttcagattttcatagatgatagtttggctgaactttttgctgatgtgat 4816396  T

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Target: chr7; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 4864048 - 4863927
Alignment:
Q  31 acagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaata 130  Q
    |||||||| || |||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |  ||| |  ||||    
T  4864048 acagaggagtacaatgtaacttggaattttgaagttgattctaattttacttatatggtaaggttacatttttgtgagtttgatccgaatataacaaata 4863949  T
Q  131 aaggtgatagagtttttcagat 152  Q
    ||||||||||||  ||||||||    
T  4863948 aaggtgatagagcctttcagat 4863927  T

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Target: chr7; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 43 - 155
Target Start/End: Complemental strand, 4643785 - 4643673
Alignment:
Q  43 aatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagag 142  Q
    |||||||||||||||||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||| |  ||| |  ||||||||||||||||    
T  4643785 aatgtaacttggaattttgaggttgattctggttttacttatatggtaaggttacatttttgtgagtttgatccggatataacaaataaaggtgatagag 4643686  T
Q  143 tttttcagatatt 155  Q
    | |||||||||||    
T  4643685 tctttcagatatt 4643673  T

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Target: chr7; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 4672793 - 4672675
Alignment:
Q  40 tataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgata 139  Q
    ||||||||||||||||||||  | |||||||||  ||| |||||||||||||||||||||||||||||||||||   ||||||||  |||| ||||||||    
T  4672793 tataatgtaacttggaattttgaggttgattcttctttcacttatatggtaaggttacatttttgtgagtttgacaggcttatcattaatacaggtgata 4672694  T
Q  140 gagtttttcagatatttat 158  Q
    |||  |||||||| |||||    
T  4672693 gagcctttcagatttttat 4672675  T

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Target: chr7; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 4631064 - 4630971
Alignment:
Q  20 gaatggatgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttga 113  Q
    |||||||||  ||| ||||||| |||||||||||||||||  |||||||||||  |||||||||||||||||| ||||||||||||||||||||    
T  4631064 gaatggatgcaacaaaggattacaatgtaacttggaattttgaagttgattcttcttttacttatatggtaagattacatttttgtgagtttga 4630971  T

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Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 18925700 - 18925875
Alignment:
Q  20 gaatggatgtgacagaggattataatgtaacttggaatttcaaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgct 119  Q
    ||||||||| |||| |||||||||||||||||||||||||  |||||||||||   ||||||||| ||||||| || |||||||| |||||||||  ||     
T  18925700 gaatggatgcgacaaaggattataatgtaacttggaattttgaagttgattctgcctttacttatttggtaagattgcatttttgcgagtttgattggca 18925799  T
Q  120 tatcaagaataaaggtgatagagtttttcagatatttatcaatgatattttggctgaacaatacgctgatgtgatt 195  Q
    ||| |||||| |||||||||||||||||||||| |||||  |||||| ||||||||||| | | ||||||||||||    
T  18925800 tataaagaatcaaggtgatagagtttttcagatttttatagatgataatttggctgaacgaaatgctgatgtgatt 18925875  T

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