View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19964_low_36 (Length: 228)
Name: NF19964_low_36
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19964_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 16080912 - 16081106
Alignment:
| Q |
21 |
atgccctttgttccgttcactggagttaatcatcaccaacagtctatactttttggttgtgctctgttatgggatgaaactgaagagagttttgtttggt |
120 |
Q |
| |
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|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16080912 |
atgccctttgttccattcacgggagttaatcatcaccaacagtctatactttttggttgtgctctgttatgggatgaaactgaagagagttttgtttggt |
16081011 |
T |
|
| Q |
121 |
tgctacgtacttggttagaagcaatggatggagttagtcctaaaactattatcactgatcaagacacttctatttctaatgcagttgcacaggtt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16081012 |
tgctacgtacttggttagaagcaatggatggagttagtcctaaaactattatcactgatcaagacacttctatttctaatgcagttgcacaggtt |
16081106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 51166545 - 51166739
Alignment:
| Q |
21 |
atgccctttgttccgttcactggagttaatcatcaccaacagtctatactttttggttgtgctctgttatgggatgaaactgaagagagttttgtttggt |
120 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51166545 |
atgccctttgttccattcactggagttaatcatcaccaacagtctatactttttggttgtgctttgttatgggatgaaactgaagagagttttgtttggt |
51166644 |
T |
|
| Q |
121 |
tgctacgtacttggttagaagcaatggatggagttagtcctaaaactattatcactgatcaagacacttctatttctaatgcagttgcacaggtt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
51166645 |
tgctacgtacttggttagaagcaatggatggagttagtcctaaaactattatcactgattaagacacttctatttctaatgcagttgcaaaggtt |
51166739 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 64550 - 64743
Alignment:
| Q |
21 |
atgccctttgttccgttcactggagttaatcatcaccaacagtctatactttttggttgtgctctgttatgggatgaaactgaagagagttttgtttggt |
120 |
Q |
| |
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||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
64550 |
atgccctttgt-ccattcactggagttaatcatcaccaacaatctatactttttggttgtgctctgttatgggatgaaactgaagagagttttgtttggt |
64648 |
T |
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| Q |
121 |
tgctacgtacttggttagaagcaatggatggagttagtcctaaaactattatcactgatcaagacacttctatttctaatgcagttgcacaggtt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
64649 |
tgctacgtacttggttagaagcaatggatggagttagtcctaaaactattatcactgatcaagacacttctatttctaatgcagttgcaaaggtt |
64743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 22639226 - 22639288
Alignment:
| Q |
21 |
atgccctttgttccgttcactggagttaatcatcaccaacagtctatactttttggttgtgct |
83 |
Q |
| |
|
||||| || ||||| ||||| |||||||||||||| ||||| || || ||||||||||||||| |
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|
| T |
22639226 |
atgcctttcgttccattcaccggagttaatcatcatcaacaatcaattctttttggttgtgct |
22639288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 48773014 - 48773208
Alignment:
| Q |
21 |
atgccctttgttccgttcactggagttaatcatcaccaacagtctatactttttggttgtgctctgttatgggatgaaactgaagagagttttgtttggt |
120 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
48773014 |
atgccctttgttccattcactggagttaatcatcaccaacggtctatactttttggttgtgctctgttatgggatgaaattgaagagagttttgtttggt |
48773113 |
T |
|
| Q |
121 |
tgctacgtacttggttagaagcaatggatggagttagtcctaaaactattatcactgatcaagacacttctatttctaatgcagttgcacaggtt |
215 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
48773114 |
tgctacgtacttggttagaagaaatggatggagttattcctaaaactattatcactgatcaagacacttctatttctaatgcagctgcacaggtt |
48773208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 39 - 209
Target Start/End: Complemental strand, 44885478 - 44885308
Alignment:
| Q |
39 |
actggagttaatcatcaccaacagtctatactttttggttgtgctctgttatgggatgaaactgaagagagttttgtttggttgctacgtacttggttag |
138 |
Q |
| |
|
||||||||||||||||| ||||| || || ||||||||||||||||| || ||||||||| ||| ||||||||||| |||||||||| |||||||||||| |
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| T |
44885478 |
actggagttaatcatcatcaacaatcaattctttttggttgtgctctcttgtgggatgaagctgtagagagttttgattggttgctaagtacttggttag |
44885379 |
T |
|
| Q |
139 |
aagcaatggatggagttagtcctaaaactattatcactgatcaagacacttctatttctaatgcagttgca |
209 |
Q |
| |
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|||||||| ||| ||| | ||||||||| ||||||| || ||| ||||| |||| | |||||||||||| |
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| T |
44885378 |
aagcaatgagtggggtttgccctaaaactgttatcacagaccaacacactgctatcaccaatgcagttgca |
44885308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 172
Target Start/End: Original strand, 19329517 - 19329662
Alignment:
| Q |
27 |
tttgttccgttcactggagttaatcatcaccaacagtctatactttttggttgtgctctgttatgggatgaaactgaagagagttttgtttggttgctac |
126 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||||| ||||| ||||| |||||||| | |||||||| ||||||||||||||||||||||| || |||| |
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| T |
19329517 |
tttgttccattcaccagagttgatcatcaccaacaatctattattttttgttgtgctgtattatgggacgaaactgaagagagttttgtttgatttctac |
19329616 |
T |
|
| Q |
127 |
gtacttggttagaagcaatggatggagttagtcctaaaactattat |
172 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||| |||||||| |
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| T |
19329617 |
gtacttggttgaaagcaatggatggagttcgtcctaatactattat |
19329662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 193
Target Start/End: Original strand, 35066775 - 35066875
Alignment:
| Q |
94 |
atgaaactgaagagagttttgtttggttgctacgtacttggttagaagcaa-tggatggagttagtcctaaaactattatcactgatcaagacacttcta |
192 |
Q |
| |
|
|||||| |||||||| |||||||||||| || ||||||| |||||||||| || || ||| |||||||||||||| |||| ||||||||||| ||| |
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| T |
35066775 |
atgaaaatgaagagatatttgtttggttgttaagtacttgattagaagcaacaggcgggggtttgtcctaaaactattgtcacaaatcaagacactgcta |
35066874 |
T |
|
| Q |
193 |
t |
193 |
Q |
| |
|
| |
|
|
| T |
35066875 |
t |
35066875 |
T |
|
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