View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19964_low_37 (Length: 227)

Name: NF19964_low_37
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19964_low_37
NF19964_low_37
[»] chr2 (3 HSPs)
chr2 (4-227)||(33679322-33679545)
chr2 (4-227)||(33686789-33687012)
chr2 (4-227)||(33703843-33704066)


Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 33679322 - 33679545
Alignment:
Q  4 accacacaccctttattgtatcaacatgcaaacttcttcggcaatgaagagcttattaagccatcaaaggaaaattacacaaatgatggcaagacctttg 103  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  33679322 accacacaccctttattgtatcaatatgcaaacttctttggcaatgaagagcttattaagccatcaaaggaaaattacacaaatgatggcaagacgtatg 33679421  T
Q  104 atggagccatgcgatgtgttcctcaaccatagaagcccggacacaaagagaacggtagcaactcttctttatgacaaccttaaaaggcatggtttcaacc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33679422 atggagccatgcgatgtgttcctcaaccatagaagcccggacacaaagagaacggtagcaactcttctttatgacaaccttaaaaggcatggtttcaacc 33679521  T
Q  204 ctttcttggatgagaaaaacatga 227  Q
    ||||||||||||||||||||||||    
T  33679522 ctttcttggatgagaaaaacatga 33679545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 33686789 - 33687012
Alignment:
Q  4 accacacaccctttattgtatcaacatgcaaacttcttcggcaatgaagagcttattaagccatcaaaggaaaattacacaaatgatggcaagacctttg 103  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  33686789 accacacaccctttattgtatcaatatgcaaacttctttggcaatgaagagcttattaagccatcaaaggaaaattacacaaatgatggcaagacgtatg 33686888  T
Q  104 atggagccatgcgatgtgttcctcaaccatagaagcccggacacaaagagaacggtagcaactcttctttatgacaaccttaaaaggcatggtttcaacc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33686889 atggagccatgcgatgtgttcctcaaccatagaagcccggacacaaagagaacggtagcaactcttctttatgacaaccttaaaaggcatggtttcaacc 33686988  T
Q  204 ctttcttggatgagaaaaacatga 227  Q
    ||||||||||||||||||||||||    
T  33686989 ctttcttggatgagaaaaacatga 33687012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 33703843 - 33704066
Alignment:
Q  4 accacacaccctttattgtatcaacatgcaaacttcttcggcaatgaagagcttattaagccatcaaaggaaaattacacaaatgatggcaagacctttg 103  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  33703843 accacacaccctttattgtatcaatatgcaaacttctttggcaatgaagagcttattaagccatcaaaggaaaattacacaaatgatggcaagacgtatg 33703942  T
Q  104 atggagccatgcgatgtgttcctcaaccatagaagcccggacacaaagagaacggtagcaactcttctttatgacaaccttaaaaggcatggtttcaacc 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33703943 atggagccatgcgatgtgttcctcaaccatagaagcccggacacaaagagaacggtagcaactcttctttatgacaaccttaaaaggcatggtttcaacc 33704042  T
Q  204 ctttcttggatgagaaaaacatga 227  Q
    ||||||||||||||||||||||||    
T  33704043 ctttcttggatgagaaaaacatga 33704066  T

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