View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19964_low_4 (Length: 568)
Name: NF19964_low_4
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19964_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 290 - 555
Target Start/End: Complemental strand, 17275480 - 17275215
Alignment:
| Q |
290 |
caatcttctcaaccctttcatgtcaacaacaacaccatcacgtgccatagcttgtcctcgtgtggaatgaccttgtcctcttgcagctataagaaaaggg |
389 |
Q |
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| T |
17275480 |
caatcttctcaaccctttcatgtcaacaacaacaccatcacgtgccatagcttgtcctcgtgtggaatgaccttgtcctcttgcagctataagaaaaggg |
17275381 |
T |
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| Q |
390 |
acagaactattatacgacaactttacaagacttactatgtcgtttaccgctgatggttgaaacactgctgctgggaattcatgtacgaggttgccataat |
489 |
Q |
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| T |
17275380 |
acagaactattatacgacaactttacaagacttactatgtcgtttaccgttgatggttgaaacactgctgctgggaattcatgtacgaggttgccataat |
17275281 |
T |
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| Q |
490 |
cagttgaagctagttcaatggcttttggatcgtttatgagtttttgagatatgttggaattttttg |
555 |
Q |
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| T |
17275280 |
cacttgaagctagttcaatggcttttggatcgtttatgagtttttgagatatgttggaattttttg |
17275215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 17275769 - 17275520
Alignment:
| Q |
1 |
aatacataccagtaacaacatccaattgatgaacactagtaatttgaggaccataacgaaaggtttgtccactaataccagcattagagagtgtccctcc |
100 |
Q |
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| T |
17275769 |
aatacataccagtaacaacatccaattgatgaacactagtaatttgaggaccataacgaaaggtttgtccactaataccagcattagagagtgtccctcc |
17275670 |
T |
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| Q |
101 |
aatggttaagtaaagataatcagtccaagaaacaggtgcaagtccatactcaagtgtttcatacaacacatcaatccatagttgttcccctccaacatca |
200 |
Q |
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| T |
17275669 |
aatagttaagtaaagataatcagtccaagaaacaggtgcaagtccatactcaagtgtttcatacaacacatcaatccatagttgttcccctccaacatca |
17275570 |
T |
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| Q |
201 |
acatagtatccaaatccaaccttaggatcctcaaaaaccttaattccaac |
250 |
Q |
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| T |
17275569 |
acatagtatccaaatccaaccttaggatcctcaaaaacctcaattccaac |
17275520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 11476601 - 11476551
Alignment:
| Q |
11 |
agtaacaacatccaattgatgaacactagtaatttgaggaccataacgaaa |
61 |
Q |
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| T |
11476601 |
agtaacaacgtccaattgatgaacactagtaatttgaggaccataacgaaa |
11476551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 205
Target Start/End: Complemental strand, 17243450 - 17243362
Alignment:
| Q |
117 |
taatcagtccaagaaacaggtgcaagtccatactcaagtgtttcatacaacacatcaatccatagttgttcccctccaacatcaacata |
205 |
Q |
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| T |
17243450 |
taatcagtccaagagagaggtgtgagtccatgcttaagtgtagcattcaaaacatcaatccacaattgttctccacccacatcaacata |
17243362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 5e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 5 - 213
Target Start/End: Complemental strand, 52443604 - 52443396
Alignment:
| Q |
5 |
cataccagtaacaacatccaattgatgaacactagtaatttgaggaccataacgaaaggtttgtccactaataccagcattagagagtgtccctccaatg |
104 |
Q |
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| T |
52443604 |
cataccagtaatcacatcgaattcatgaacgttggtgatttgaggtccgtaaagaaacgtctggccactaattccagcattggaaagtgttcctccaacc |
52443505 |
T |
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| Q |
105 |
gttaagtaaagataatcagtccaagaaacaggtgcaagtccatactcaagtgtttcatacaacacatcaatccatagttgttcccctccaacatcaacat |
204 |
Q |
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| T |
52443504 |
gtgaggtaaagatagtcagtccaagaaacaggtgcaagtccatgttcaagtgttgcatacaaaacatcaatccatagttgttctcctccaacatcaacat |
52443405 |
T |
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| Q |
205 |
agtatccaa |
213 |
Q |
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|||| |||| |
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| T |
52443404 |
agtaaccaa |
52443396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 2 - 205
Target Start/End: Original strand, 52454513 - 52454716
Alignment:
| Q |
2 |
atacataccagtaacaacatccaattgatgaacactagtaatttgaggaccataacgaaaggtttgtccactaataccagcattagagagtgtccctcca |
101 |
Q |
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| T |
52454513 |
atacgtaccagtaacaacatccaattcatgaacattggaaatttgaggaccaaatcggaaggtttgtccactaataccagcattagagagagttccacca |
52454612 |
T |
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| Q |
102 |
atggttaagtaaagataatcagtccaagaaacaggtgcaagtccatactcaagtgtttcatacaacacatcaatccatagttgttcccctccaacatcaa |
201 |
Q |
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| T |
52454613 |
accgataaatacaaataatcagtccaagaaagtggtgtaagtcctttttcaaggcttgcatgcaacacatcaatccaacgttgtccaccaccaacatcta |
52454712 |
T |
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| Q |
202 |
cata |
205 |
Q |
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|||| |
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| T |
52454713 |
cata |
52454716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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