View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19964_low_5 (Length: 536)
Name: NF19964_low_5
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19964_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 16 - 519
Target Start/End: Complemental strand, 1050352 - 1049849
Alignment:
| Q |
16 |
atccgtcattagagatgcctatctcttttggtctggatatgcttatcaaaggaagcgtatgcggttgttccaacggtttattcttgtgttgtaagaatcg |
115 |
Q |
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| T |
1050352 |
atccgtcactagagaggcctatctcttttggtctggatatgcttatcaaaggaagcgtatgcggttgttccaacggtttattcttgtgttgtaagaatcg |
1050253 |
T |
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| Q |
116 |
atatacctatggtatcgactattatatttatgatccacttatgaaaaaatgtgtccctatacctccttctccttcaacgtgtaatgaaagtttattcgcg |
215 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1050252 |
atacacctatggtatcgactattatatttacgatccacttatgaaaaaatgtgtccctatacctccttctccttcaacgtgtaatgaaagtttattcgcg |
1050153 |
T |
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| Q |
216 |
gtaggattcatttgcaatcctactggcacggcggtgatcactccttctccaaatgaatgtaactttcgagttgtgatcattaagtccttcataaaaaggt |
315 |
Q |
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| T |
1050152 |
gtaggattcatttgcaatcctacgggcgcggcggtgatcactccttctccaaatgaacgtaactttcgagttgtgatcattaagtccttcataaaaaggt |
1050053 |
T |
|
| Q |
316 |
tgttcgagatggagttatatgttttctcctcagagacggggtcatggaaacgcgttgttatgaatattccggatggattcgcttttgctcctcattggct |
415 |
Q |
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| T |
1050052 |
tgttcgagatggagttatatgttttctcctcagagacggggtcatggaaacgcgttgttatgattattccggatggattcgcttttgctcctcattggct |
1049953 |
T |
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| Q |
416 |
actaagtttttcctatggtggaagcttgtatttcatggggaggacaagcatttttgtgtttgatccttatacaaacacaaaggatacccttaattatccc |
515 |
Q |
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| T |
1049952 |
actaagtttttcctatggtggaagcttgtatttcatggggaggacaagcatttttgtgtttgatccttatacaaacacaagggatacccttaattatccc |
1049853 |
T |
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| Q |
516 |
ttag |
519 |
Q |
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|||| |
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| T |
1049852 |
ttag |
1049849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 279 - 485
Target Start/End: Complemental strand, 42875586 - 42875380
Alignment:
| Q |
279 |
tttcgagttgtgatcattaagtccttcataaaaaggttgttcgagatggagttatatgttttctcctcagagacggggtcatggaaacgcgttgttatga |
378 |
Q |
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||||||||||||||||| |||||||| || |||| ||| |||||| | | |||||||||||||| |||| ||| |||||| | | ||||||||| |
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| T |
42875586 |
tttcgagttgtgatcatcaagtcctttttagtaagggtgtccgagatcaaagttgatgttttctcctcaaagacagggcaatggaatcacattgttatga |
42875487 |
T |
|
| Q |
379 |
atattccggatggattcgcttttgctcctcattggctactaagtttttcctatggtggaagcttgtatttcatggggaggacaagcatttttgtgtttga |
478 |
Q |
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| T |
42875486 |
aaattccgaagggcttcgcttttgctcctcattggcttctgagtttttcatactgtggaaagctgtatttcatggggagggcaaacatttttgtgtttga |
42875387 |
T |
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| Q |
479 |
tccttat |
485 |
Q |
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||||||| |
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| T |
42875386 |
tccttat |
42875380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 42875795 - 42875707
Alignment:
| Q |
73 |
tatgcggttgttccaacggtttattcttgtgttgtaagaatcgatatacctatggtatcgactattatatttatgatccacttatgaaa |
161 |
Q |
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| T |
42875795 |
tatgcggttgttccaacggcttattcttgtgttgtaacaaccggtacacatatggtagcggctattatgtttatgatccgcttgtgaaa |
42875707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 42751148 - 42751229
Alignment:
| Q |
73 |
tatgcggttgttccaacggtttattcttgtgttgtaagaatcgatatacctatggtatcgactattatatttatgatccact |
154 |
Q |
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| T |
42751148 |
tatgtggttgttccaatggtttattcttgtgttctaagaatcgggacacatgtgctaccgtctattatgtttatgatccact |
42751229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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