View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19964_low_9 (Length: 437)
Name: NF19964_low_9
Description: NF19964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19964_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 17 - 411
Target Start/End: Original strand, 18199496 - 18199890
Alignment:
| Q |
17 |
aggaagaacctgtaatcagtgttattctgagagcaagtgttactgtcaagaaacaagggagcactattgtcttcaaaagacaaaccaataccagatgaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18199496 |
aggaagaacctgtaatcagtgttattctgagagcaagtgttactgtcaagaaacaagggagcactattgtcttcaaaagacaaaccaataccagatgaca |
18199595 |
T |
|
| Q |
117 |
aagttgaccttgaagttgtatgaggatacataaaggactgttgcaaattagaagcatagcaagaattttgaggatagttttggtgatgttgttgtgtctc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18199596 |
aagttgaccttgaagttgtatgaggatacataaaggactgttgcaaattagaagcatagcaagaattttgaggatagttttggtgatgttgttgtgtctc |
18199695 |
T |
|
| Q |
217 |
aaaagaca---aagaagaagaattagttaatgatgcagggctatttttggtaagtgatgaagcattattaatattatttgtatttgttgttgttgctgtt |
313 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18199696 |
aaaagacaaagaagaagaagaattagttaatgatgcagggctatttttggtaagtgatgaagcattattaatattatttgtat---ttgttgttgctgtt |
18199792 |
T |
|
| Q |
314 |
ttaacaacttccacaggctttcttgaacggttttttcctctatgcatgtgtctttcacagtatttagaatctggatatgcttcttttgagcatctcca |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18199793 |
ttaacaacttccacaggctttcttgaacggttttttcctctatgcatgtgtctttcacagtatttagaatctggatatgcttcttttgagcatctcca |
18199890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 310 - 411
Target Start/End: Complemental strand, 52052087 - 52051986
Alignment:
| Q |
310 |
tgttttaacaacttccacaggctttcttgaacggttttttcctctatgcatgtgtctttcacagtatttagaatctggatatgcttcttttgagcatctc |
409 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
52052087 |
tgttttcaaaacttccacaggctttcttgaacggtttttccctctatgcatgtgcctttcacagtactttgaatctggatatgcttcttttgaacatctc |
52051988 |
T |
|
| Q |
410 |
ca |
411 |
Q |
| |
|
|| |
|
|
| T |
52051987 |
ca |
52051986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 52052332 - 52052299
Alignment:
| Q |
56 |
ttactgtcaagaaacaagggagcactattgtctt |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
52052332 |
ttactgtcaagaaacaagggagcactattgtctt |
52052299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 322 - 411
Target Start/End: Original strand, 7246548 - 7246637
Alignment:
| Q |
322 |
ttccacaggctttcttgaacggttttttcctctatgcatgtgtctttcacagtatttagaatctggatatgcttcttttgagcatctcca |
411 |
Q |
| |
|
||||||||||||||||||||||||| | ||||| |||||||||||||||||||| || || |||||||||||||| |||||||||||||| |
|
|
| T |
7246548 |
ttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagcatctcca |
7246637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 322 - 375
Target Start/End: Complemental strand, 42092014 - 42091961
Alignment:
| Q |
322 |
ttccacaggctttcttgaacggttttttcctctatgcatgtgtctttcacagta |
375 |
Q |
| |
|
||||||||||||||||||||||||| | || | ||||||||||||||||||||| |
|
|
| T |
42092014 |
ttccacaggctttcttgaacggtttctaccacgatgcatgtgtctttcacagta |
42091961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University