View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19965_high_13 (Length: 383)
Name: NF19965_high_13
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19965_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 71 - 368
Target Start/End: Original strand, 51307474 - 51307779
Alignment:
| Q |
71 |
aggacctccaatccaatgaaaaggctaaagttaaactttaattgggtgagaaaagtaaaagggtccacccttattatttgattgaattgaattaaattnn |
170 |
Q |
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| T |
51307474 |
aggacctccaatccaatgaaaaggctaaagttaaactt-aattggctgagaaaagtaaaagggtccacccttattatttgattgaattgaattaaattaa |
51307572 |
T |
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| Q |
171 |
nnnnnnt------------agtacaatccaattgaaaagatcttcacgtgtaagttgatgtagcatgtgcttatgtccagtcctttaggtttgatgagag |
258 |
Q |
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| T |
51307573 |
attaaattaaaaaaaaaatagtacaatccaattgaaaagatcttcacgtgtaagttgatgtagcatgtgcttatgtccagtcctttaggtttgatgagag |
51307672 |
T |
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| Q |
259 |
agataagagaagtcaataaaaaggagtgatgttccttccacaatcttaacctcatctcacggatcttgctcctctctttccttctcttcttctttatgtg |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
51307673 |
agataagagaagtcaataaaaaggagtgatgttccttccacaatcttaacctcatctcacggatcttgctcctctctttccttc---tcttctctatgtg |
51307769 |
T |
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| Q |
359 |
tttgtgtttg |
368 |
Q |
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|||||||||| |
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| T |
51307770 |
tttgtgtttg |
51307779 |
T |
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