View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19965_high_19 (Length: 338)
Name: NF19965_high_19
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19965_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 41975612 - 41975835
Alignment:
| Q |
15 |
ttgaagctgcagaatggtaatttttcccataaacacaagtgtatatgaatttacttagctttgaggatcactaactcatcatcctctggaagcccctgat |
114 |
Q |
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| T |
41975612 |
ttgaagctgcagaatggtaattttgcccataaacacaagtgtatatgaatttactt-----tgaggatcactaactcatcctcctctggaagcccctgat |
41975706 |
T |
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| Q |
115 |
gaaagaggacttgtttgcaatctcatcatatctataaaccttctcttggaagttaggtatcacactgaaggcaaatgcttgatttcaaagcattaagatt |
214 |
Q |
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| T |
41975707 |
gaaagaggacttgtttgcaatctcatcatatctataaaccttctcttggaagtgaggtatcacactgaaggcaaatgcttgatttcaaagcattaagatt |
41975806 |
T |
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| Q |
215 |
tgtagagacacaaatcatggcagaagcaa |
243 |
Q |
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| T |
41975807 |
tgtagagacagaaatcatggcagaagcaa |
41975835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 241 - 291
Target Start/End: Original strand, 41976916 - 41976966
Alignment:
| Q |
241 |
caaagagaattagagaatttatggctttacgtggatgctgcatccagaagc |
291 |
Q |
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| T |
41976916 |
caaagagaagtagagaatttatggctttacgtggatgctgcatccagaagc |
41976966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 324
Target Start/End: Original strand, 41977917 - 41977945
Alignment:
| Q |
296 |
ccaattacctaagtgattctagttggtga |
324 |
Q |
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| T |
41977917 |
ccaattacctaagtgattctagttggtga |
41977945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 1222639 - 1222426
Alignment:
| Q |
15 |
ttgaagctgcagaatggtaatttttcccataaacacaagtgtatatgaatttacttagctttgaggatcactaactcatcatcctctggaagcccctgat |
114 |
Q |
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| T |
1222639 |
ttgaagctgcagaatggtaatttttcccataaacacaagtgtatatgaatttactt-----tgaggatcactaactcatcatcctctggaagcccctgtt |
1222545 |
T |
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| Q |
115 |
gaaagaggacttgtttgcaatctcatcatatctataaaccttctcttggaagttaggtatcacactgaaggcaaatgcttgatttcaaagcattaagatt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||| |||| |
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| T |
1222544 |
gaaagaggacttgtttgcaatctcatcatatctataaaccttctcttggaagtgaggtatcacaccgaaggcaaatgctt----------aattaggatt |
1222455 |
T |
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| Q |
215 |
tgtagagacacaaatcatggcagaagcaa |
243 |
Q |
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|||||||||| |||||||||||||||||| |
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| T |
1222454 |
tgtagagacagaaatcatggcagaagcaa |
1222426 |
T |
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