View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19965_high_2 (Length: 602)
Name: NF19965_high_2
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19965_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 193 - 586
Target Start/End: Complemental strand, 9247870 - 9247480
Alignment:
| Q |
193 |
ttagaacaaattgatgcgttgacacaatcggttaatttttccatgacnnnnnnn-accaaaacaataaagaaattatatatttannnnnnnaaagaaata |
291 |
Q |
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| T |
9247870 |
ttagaacaaattgatgcgttgacacaatcggttaatttttccatgacttttttttaccaaaacaataaagaa----tatttttttttttttaaagaaata |
9247775 |
T |
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| Q |
292 |
aagaaattaattatgtaccaaccaccatagatacttttatttggccggtcacacaaagtctactaaataattaaatgtatcatacaatgttcgcatggaa |
391 |
Q |
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| T |
9247774 |
aagaaattaattatgtaccaaccaccgtagatacttttatttggccggtcacacaaagtctactaaataattaaatgtatcatacaatgttcgcatggaa |
9247675 |
T |
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| Q |
392 |
tgctcctacgtctctacacacctagtttgagacataattttgcaattgcatgcttattggatctaccgtatatcttttgaaaacgatttttctccatcat |
491 |
Q |
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| T |
9247674 |
tgctcctacgtctctacacacctagtttgagacataattttgcaattgcatgcttattggatctaccgtatatcttttgaaaacgatttttctccatcat |
9247575 |
T |
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| Q |
492 |
ttcattatcaattaaattatttttaataataaaatcatggatacatattagtttatttgtagtagtacatgagtattccgtccgtactcaaatat |
586 |
Q |
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| T |
9247574 |
ttcattatcaattaaattatttttaataataaaatcatggatacatattagtttatttgtagtagtacatgagtattccgtccgtactcagatat |
9247480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 23 - 164
Target Start/End: Complemental strand, 9248856 - 9248716
Alignment:
| Q |
23 |
agttttttgacaatagaatgggtgtaaagttgaattatgcaaagttccttcaaaaaatatccagatgtctatgtctgaaaccatacatcaaacttgaaac |
122 |
Q |
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| T |
9248856 |
agttttttgacaatagaatgggtgtaaagttgaattatgcaaagttaggtcgataa-tatccagatgtctttgtctgaaaccatacatcaaacttgaaac |
9248758 |
T |
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| Q |
123 |
attaaccattcaaaaattaggcaaagaatgattaaccgaaat |
164 |
Q |
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| T |
9248757 |
attaaccattcaaaaattaggcaaagaatgattaaccgaaat |
9248716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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