View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19965_high_22 (Length: 325)
Name: NF19965_high_22
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19965_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 2 - 271
Target Start/End: Complemental strand, 27136540 - 27136274
Alignment:
| Q |
2 |
ctactagtaatttgattgaccaaattgatttatggaagaccaattcaagaaccaaaataactaacagaaaaactcattcaaggaataaactaactaagga |
101 |
Q |
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| T |
27136540 |
ctactagtaatttgatggaccaaattgacttatggaagaccaattcaggaaccaaaataactaacagaaaaactcattcaaggactaaactaacttggta |
27136441 |
T |
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| Q |
102 |
gagacaatttcgaagatgtttttgtaattttcgttagttagctcagggactataacgacaacgcctaacacattcaaggaccaaaatgatcatttactct |
201 |
Q |
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| T |
27136440 |
gagacaa-ttcgaagatgtttttgtaattttggttagttagctcagggactataacgacaatgcctgacacattcaaagaccaaaatgatcattta--ct |
27136344 |
T |
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| Q |
202 |
cggttaatttatagattgagttgcgcaatgatcagaattagtcagggagtagcttgatctcatccctatt |
271 |
Q |
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| T |
27136343 |
ccgttaattcatagattgagttactcaatggtcagagttagtctgggagtagcttgatctcatccctatt |
27136274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 7891222 - 7891155
Alignment:
| Q |
7 |
agtaatttgattgaccaaattgatttatggaagaccaattcaagaaccaaaataactaacagaaaaac |
74 |
Q |
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| T |
7891222 |
agtaatttgatagacaaaactgattaatgaaagacatattcaaggaccaaaataactaacaaaaaaac |
7891155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 186
Target Start/End: Original strand, 7331359 - 7331397
Alignment:
| Q |
148 |
ggactataacgacaacgcctaacacattcaaggaccaaa |
186 |
Q |
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| T |
7331359 |
ggactatagcgacaatgcctaacacattcaaggaccaaa |
7331397 |
T |
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