View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19965_high_29 (Length: 271)
Name: NF19965_high_29
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19965_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 4753445 - 4753203
Alignment:
| Q |
18 |
caccatgaaatcctcaaacctaatatgcaaatatgtctttaaaatctcaaaaaatcgaacccttgcttagaatggaaaatgagctttgttagaaaatcct |
117 |
Q |
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| T |
4753445 |
caccatgaaatcctcaagcctaatatgcaaatatgtctttaaaatctcaaaaaatcgaacccttgcttagaatggaaaatgagctttattagaaaatcct |
4753346 |
T |
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| Q |
118 |
tggtcgattaaacctgccacgatgctcataggtcgtagcgtgatccttcacttgtcttacgtgtcacgaggcatcaatgtaaaatcgtgccataatgtag |
217 |
Q |
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| T |
4753345 |
tggtcgattaaacctgccacgatgctcataggtcgtagcgtgatccttcacttgtcttacgtgtcacgaggcatcaatgtaaaatcgtgccataatgtag |
4753246 |
T |
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| Q |
218 |
aaaaatcgtgtcacgatcagtttcaaaatttcaatctcttcat |
260 |
Q |
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| T |
4753245 |
aaaaatcgtgtcacgatcagtttcaaaatttcaatctcttcat |
4753203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 4742022 - 4741917
Alignment:
| Q |
142 |
ctcataggtcgtagcgtgatccttcacttgtcttacgtgtcacgaggcatcaatgtaaaatcgtgccataatgtagaaaaatcgtgtcacgatcagtttc |
241 |
Q |
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||||||| |||| ||||||| ||||||||||||| ||| | || ||||||||||| || |||||| ||||||| || || |||||||||| |||||| |
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| T |
4742022 |
ctcatagatcgtggcgtgatacttcacttgtcttttatgttaggaaacatcaatgtaacattgtgccacaatgtagcaatattgtgtcacgattagtttc |
4741923 |
T |
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| Q |
242 |
aaaatt |
247 |
Q |
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| |||| |
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| T |
4741922 |
agaatt |
4741917 |
T |
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