View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19965_high_4 (Length: 573)
Name: NF19965_high_4
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19965_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 113 - 555
Target Start/End: Original strand, 45181700 - 45182130
Alignment:
| Q |
113 |
gtaaaagtaggtaaattaagtaagcatacgttgatagaggtaattactgattataatttgtaggttccatctgaaaatcttaaaaggcaaaacataattg |
212 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45181700 |
gtaaaagtaggtaaatcaagtaagcatacgttgatagaggtaattactgattataatttgtacgttccatctgaaaatcttaaaaggcaaaacataattg |
45181799 |
T |
|
| Q |
213 |
tttaatgaaacagatcaacatggttgtgtattactattagagtactacttacagtccagtatatagtagatgcagtgtcgctaaatgatgctcgagccag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45181800 |
tttaatgaaacagatcaacatggttgtgtattactattagagtactacttacagtccagtatatagtagatgcagtgtcgctaaatgatgctcgagccag |
45181899 |
T |
|
| Q |
313 |
tccaaaatgaaatagatacatgagtttactatctaaaataataaaggaagtgaagtgattataattaatgatggatacctgaatgtatatattttattta |
412 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45181900 |
tccaaaatgaaatagatacatgagtttaatatctaaaataataaaggaagtgaagtgattataattaatgatggatacctgaatgtatatat----ttta |
45181995 |
T |
|
| Q |
413 |
tgcctcgaagaagttggtacaagaaaaacttgtgatgatcaggagtaaggtcattatttgccttgatgacttgatgtaaatcagagtccatcaactcaaa |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
45181996 |
tgcctcgaagaagttggtacaagaaaaacttgtgatgatcaggagtaaggtcattatttgc--------cttgatgtaaatcagagtccatcaactcaaa |
45182087 |
T |
|
| Q |
513 |
aacaagataaatatctttgaactcacgaagaggagaaggagga |
555 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45182088 |
aacaagataaatatctttgaactcacgacgaggagaaggagga |
45182130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 35 - 222
Target Start/End: Original strand, 45174745 - 45174927
Alignment:
| Q |
35 |
aaaacttacttttgtgaaaaaagaaccacatagttcaggtgcacggtaccacctagttgcaatataatatagtcctttgtaaaagtaggtaaattaagta |
134 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||| |
|
|
| T |
45174745 |
aaaacttacttttgagaaaaaagaaccacatagttcaggtgcacggtaccacctagttgc-----aacatagtccttggtaaaagtaggtaaattaagtc |
45174839 |
T |
|
| Q |
135 |
agcatac-gttgatagaggtaattactgattataatttgtaggttccatctgaaaatctt-aaaaggcaaaacataattgtttaatgaaa |
222 |
Q |
| |
|
|||| | ||| | ||||||| || |||| ||||||||||||||| ||||||||||| |||||| |||||||||||| || |||||| |
|
|
| T |
45174840 |
agcaagcggtttagagaggtagcta--gattgcaatttgtaggttccaactgaaaatcttaaaaaggaaaaacataattgattgatgaaa |
45174927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 45181633 - 45181702
Alignment:
| Q |
13 |
aagaatatatgatgtcaaacaaaaaacttacttttgtgaaaaaagaaccacatagttcaggtgcacggta |
82 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45181633 |
aagaaaatatgatgtcaaacaaaaaacttacttttgtgaaaaaagaaccacatagttcaggtgcacggta |
45181702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 414 - 527
Target Start/End: Original strand, 45175184 - 45175297
Alignment:
| Q |
414 |
gcctcgaagaagttggtacaagaaaaacttgtgatgatcaggagtaaggtcattatttgccttgatgacttgatgtaaatcagagtccatcaactcaaaa |
513 |
Q |
| |
|
|||||| |||||||| ||||||||||| | ||| || | ||||||||| |||| ||||||||| || |||||||||| |||||| |||||||||||||| |
|
|
| T |
45175184 |
gcctcggagaagttgatacaagaaaaattggtggtgctgaggagtaagatcatgatttgccttaattacttgatgtagatcagattccatcaactcaaag |
45175283 |
T |
|
| Q |
514 |
acaagataaatatc |
527 |
Q |
| |
|
|||| ||| ||||| |
|
|
| T |
45175284 |
acaacatagatatc |
45175297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 29961966 - 29962023
Alignment:
| Q |
39 |
cttacttttgtgaaaaaagaaccacatagttcaggtgcacggtaccacctagttgcaa |
96 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||| ||| |||| |
|
|
| T |
29961966 |
cttacttttgagaaaaaagaaccacatagttcaggtgcacgataccaccgagtcgcaa |
29962023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 462 - 533
Target Start/End: Complemental strand, 48725084 - 48725013
Alignment:
| Q |
462 |
gtcattatttgccttgatgacttgatgtaaatcagagtccatcaactcaaaaacaagataaatatctttgaa |
533 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| || ||||| | |||||||||| ||| ||||||||||| |
|
|
| T |
48725084 |
gtcatcatttgctttgatgacttgatgtaaatctgattccataagttcaaaaacaacatatatatctttgaa |
48725013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 497
Target Start/End: Complemental strand, 15161069 - 15160986
Alignment:
| Q |
414 |
gcctcgaagaagttggtacaagaaaaacttgtgatgatcaggagtaaggtcattatttgccttgatgacttgatgtaaatcaga |
497 |
Q |
| |
|
|||||||||||||||||| | |||| | ||||| || || ||||||| |||||||||||||| || || ||||||| |||||| |
|
|
| T |
15161069 |
gcctcgaagaagttggtagaggaaatatttgtggtggtctagagtaagatcattatttgccttaattacatgatgtacatcaga |
15160986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 533
Target Start/End: Original strand, 7253097 - 7253216
Alignment:
| Q |
414 |
gcctcgaagaagttggtacaagaaaaacttgtgatgatcaggagtaaggtcattatttgccttgatgacttgatgtaaatcagagtccatcaactcaaaa |
513 |
Q |
| |
|
|||||| ||||| || || | |||||||| || ||| || || || || |||| |||||| |||||||| |||||||||||||| ||||| | ||||| |
|
|
| T |
7253097 |
gcctcgtagaagctgatagaggaaaaactggtaatgctctggtgtcagatcatcatttgctttgatgacctgatgtaaatcagattccatgagttcaaat |
7253196 |
T |
|
| Q |
514 |
acaagataaatatctttgaa |
533 |
Q |
| |
|
|||| ||| ||||||||||| |
|
|
| T |
7253197 |
acaacatatatatctttgaa |
7253216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 462 - 530
Target Start/End: Complemental strand, 30813349 - 30813281
Alignment:
| Q |
462 |
gtcattatttgccttgatgacttgatgtaaatcagagtccatcaactcaaaaacaagataaatatcttt |
530 |
Q |
| |
|
||||| ||| || |||||||||||||| | |||||| ||||| | |||||| |||| |||||||||||| |
|
|
| T |
30813349 |
gtcatcattagctttgatgacttgatggagatcagactccatgagctcaaagacaacataaatatcttt |
30813281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University