View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19965_low_1 (Length: 775)
Name: NF19965_low_1
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19965_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 3 - 762
Target Start/End: Original strand, 11575513 - 11576268
Alignment:
| Q |
3 |
agtatattgatactcctgacgacaactattaatcatcgagaagtacaaaaatttaacataaaaatacatttattatnnnnnnnnnnnnnnnnnnn--ttg |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
11575513 |
agtatattgatactcctgac---aactattaatcatcgagaagtacaaaaattgaacataaaaatacatttattataaataaaaaaagtgcaaaaaattg |
11575609 |
T |
|
| Q |
101 |
tgattaatgctattaatggggtatcaatgtagttgagatgcctgatgtttcatgtgatgcctcggcaatctaattttttcttaaa-taatagnnnnnnnn |
199 |
Q |
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||||||||| |||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
11575610 |
tgattaatgttatttatggggtatcaccttagttgagatgccttctgtttcatgtgatgcctcggcaatctaagtttttcttaaaataatagaaaaaaa- |
11575708 |
T |
|
| Q |
200 |
gtaatagaatttgatttatatatacgtataattaacatttgacatcacaccttacaataattaaataactctttcattttattgtacatatttttctcat |
299 |
Q |
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||||||||||||||||||||||| | |||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11575709 |
gtaatagaatttgatttatatat--gaataattaacatttg-catcacaccttacgataattaaataactctatcattttattgtacatatttttctcat |
11575805 |
T |
|
| Q |
300 |
attcattatcctaatattttaaccctaannnnnnnnnnnnnnnnnnnnnnnnccaaatagaaaattcggatacatcatcgataagcttatcatgcaaaaa |
399 |
Q |
| |
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|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11575806 |
attcattatcctgatattttaaccctaatttttcttttgctgtttttgttgtccaaatagaaaattcggatacatcatcgataagcttatcatgcaaaaa |
11575905 |
T |
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| Q |
400 |
cctaattcaccagagcagtcgatgtatgcacgtcttgtggttcgcccagaagctatagatgtaattgaccattttcttgaatataagccaataatgaagt |
499 |
Q |
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| T |
11575906 |
cctaattcaccagagcagtcgatgtatgcacgtcttgtggttcgcccagaagctatagatgtgattgaccattttcttgaatataagccaataatgaagt |
11576005 |
T |
|
| Q |
500 |
tctccattaatgggaaacatgtttgggctagaaaatatattcccaagttgccaccaccatttgaacctgggacatctcagtattttccatgatattttct |
599 |
Q |
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| T |
11576006 |
tctccattaatgggaaacatgtttgggctagaaaatatattcccaagttgccaccaccatttgaacctgggacatctcagtattttccatgatattttct |
11576105 |
T |
|
| Q |
600 |
taagcttggattttgttgcttggaggatttagagatgattgtatgatttctctatcaatcttgttgcttatcatggagggttttggtgctgaaaaacaat |
699 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11576106 |
taagcttggattttgttgcttggaggatttggagatgattgtatgatttctctatcaatcttgttgcttatcatggagggttttggtgctgaaaaacaat |
11576205 |
T |
|
| Q |
700 |
gtttcttctagacttgatgaaatttattttcttgtcattaaacttaattaatgttttcatatt |
762 |
Q |
| |
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| T |
11576206 |
gtttcttctagacttgatgaaatttattttcttgtcattaaacttaattaatgttttcatatt |
11576268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 422 - 546
Target Start/End: Complemental strand, 18329699 - 18329575
Alignment:
| Q |
422 |
tgtatgcacgtcttgtggttcgcccagaagctatagatgtaattgaccattttcttgaatataagccaataatgaagttctccattaatgggaaacatgt |
521 |
Q |
| |
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||||||| |||||||| ||||| || || ||||| ||||||||||| ||||| ||||| || || ||| |||||| |||||||||||||| || ||||| |
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| T |
18329699 |
tgtatgctcgtcttgttgttcgtcctgaggctatggatgtaattgatcatttccttgactacaattcaagaatgaaattctccattaatggaaagcatgt |
18329600 |
T |
|
| Q |
522 |
ttgggctagaaaatatattcccaag |
546 |
Q |
| |
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|||||||||||||||||||| |||| |
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| T |
18329599 |
ttgggctagaaaatatattcgcaag |
18329575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 388 - 546
Target Start/End: Original strand, 46441989 - 46442147
Alignment:
| Q |
388 |
atcatgcaaaaacctaattcaccagagcagtcgatgtatgcacgtcttgtggttcgcccagaagctatagatgtaattgaccattttcttgaatataagc |
487 |
Q |
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||||||||| || | |||||||| ||||| || |||||||| |||||||| ||||| | || ||| ||||| | |||| | ||| ||||| |||| | |
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| T |
46441989 |
atcatgcaagaagcgaattcaccggagcaatcaatgtatgctcgtcttgtagttcgtcgtgaggctgtagatatggttgatcgtttccttgacgataatc |
46442088 |
T |
|
| Q |
488 |
caataatgaagttctccattaatgggaaacatgtttgggctagaaaatatattcccaag |
546 |
Q |
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||| |||||| |||||||||||||| ||| |||||||| ||||||||| |||| |||| |
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| T |
46442089 |
caagaatgaaattctccattaatggaaaaagtgtttgggttagaaaatacattcgcaag |
46442147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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