View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19965_low_12 (Length: 428)
Name: NF19965_low_12
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19965_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 23 - 417
Target Start/End: Original strand, 3907770 - 3908164
Alignment:
| Q |
23 |
tcgaatggccaacaaggatgaaaatagcaattggaatcacaaatggtctctcttgcctccacaatcaagagaatatagtacagggaaatctcacctcaag |
122 |
Q |
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| T |
3907770 |
tcgaatggccaacaaggatgaaaatagctattggaatcactaatggtctattttgcttacacaaccaagagaatatagttcatgggaatctcacctcaag |
3907869 |
T |
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| Q |
123 |
taacatactattggatgagcaaacaaaccctcacatcatagattttggtctttcaagactaatgacaacttctgccaacaccaacatcattgctacagca |
222 |
Q |
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| T |
3907870 |
caacatactattggatgagcaaacaaatcctcacatcacagattttggtctttcaagactaatgacaacttctgccaacaccaacatcattgctacagca |
3907969 |
T |
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| Q |
223 |
ggaagtctcggatacaatgcaccggagctttcaaagacaaagaaacctaccacaaagacagacgtttacagcctcggtgttatccttttggagctcttaa |
322 |
Q |
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| T |
3907970 |
ggaagtcttggatacaatgcaccggagctttcaaagacaaagaaacctaccacaaaaaccgatgtttacagtctcggcgtcattcttttggagcttttaa |
3908069 |
T |
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| Q |
323 |
ctggtaagccaccaggagaaccaaccaatggcatggacttgcctcaatatgttgcatccattgttaaagaagaatggacaaatgaagtgtttgat |
417 |
Q |
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| T |
3908070 |
ctggtaaaccaccaggagaaccaacaaatggaatggacttgcctcaatatgttgcatccattgttaaagaagagtggacaaatgaagtgtttgat |
3908164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 182 - 417
Target Start/End: Complemental strand, 4222949 - 4222716
Alignment:
| Q |
182 |
taatgacaacttctgccaacaccaacatcattgctacagcaggaagtctcggatacaatgcaccggagctttcaaagacaaagaaacctaccacaaagac |
281 |
Q |
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| T |
4222949 |
taatgacaacttcagccaacaaaaacgtcattgctataaaaggaactcttggctacaatgcaccagagattttaaccacaaagaaacctaccacaacgac |
4222850 |
T |
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| Q |
282 |
agacgtttacagcctcggtgttatccttttggagctcttaactggtaagccaccaggagaaccaaccaatggcatggacttgcctcaatatgttgcatcc |
381 |
Q |
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| T |
4222849 |
ccatatttacagcttt--tgttatccttttggagattttaactggtaaaccgcttggagaaccgaccaatggcatggagttgcgtcaatatgttgcatct |
4222752 |
T |
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| Q |
382 |
attgttaaagaagaatggacaaatgaagtgtttgat |
417 |
Q |
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| T |
4222751 |
atagttaaagattaatggattaatgaagtgtttgat |
4222716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 355 - 417
Target Start/End: Original strand, 3924118 - 3924180
Alignment:
| Q |
355 |
atggacttgcctcaatatgttgcatccattgttaaagaagaatggacaaatgaagtgtttgat |
417 |
Q |
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| T |
3924118 |
atggacttgcctcaatatgttgcatccattgttaaagaagaatggacaaatgaagtgtttgat |
3924180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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