View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19965_low_14 (Length: 381)
Name: NF19965_low_14
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19965_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 9934814 - 9935169
Alignment:
| Q |
18 |
attagtaggatctagaaaaccagttttgtatgttnnnnnnnnttgtttaaattctagtgatgaattaatccggtttgttgaactaaccggtattcctgtt |
117 |
Q |
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| T |
9934814 |
attagtaggatctaaaaaaccagttttgtatgttgggggtggttgtttaaattctagtgatgaattaatccggtttgttgaactaaccggtattcctgtt |
9934913 |
T |
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| Q |
118 |
gcgagtactttaatgggacttggttgttaccctattggaggtgaatattctctttcaatgttgggtttgcatggtacggtttatgctaattatgctgttg |
217 |
Q |
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| T |
9934914 |
gcgagtactttaatgggacttggttgttaccctattggaggtgaatattctctttcaatgttgggtttgcatggtacggtttatgctaattatgctgttg |
9935013 |
T |
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| Q |
218 |
ataatagtgatttgttgcttgcttttggggttaggtttgatgatagagttactggaaagttagaaacttttgctagtagggctaagattgttcatataga |
317 |
Q |
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| T |
9935014 |
ataatagtgatttgttgcttgcttttggggttaggtttgatgatagagttactggaaagttagaaacttttgctagtagggctaagattgttcatataga |
9935113 |
T |
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| Q |
318 |
tattgattcagctgagattgggaagaataagattccacatgtttcgatctgtgctg |
373 |
Q |
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| T |
9935114 |
tattgattcagctgagattgggaagaataagattccacatgtttcgatttgtgctg |
9935169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 185 - 348
Target Start/End: Original strand, 3472405 - 3472568
Alignment:
| Q |
185 |
tgcatggtacggtttatgctaattatgctgttgataatagtgatttgttgcttgcttttggggttaggtttgatgatagagttactggaaagttagaaac |
284 |
Q |
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| T |
3472405 |
tgcatgggacagtttatgctaattatgcggttgataagagtgatcttttgcttgcgtttggggttaggtttgatgatcgggttactgggaagcttgaggc |
3472504 |
T |
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| Q |
285 |
ttttgctagtagggctaagattgttcatatagatattgattcagctgagattgggaagaataag |
348 |
Q |
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| T |
3472505 |
ttttgcgagccgggcgaagattgttcatattgatattgatgctgctgagattgggaagaataag |
3472568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 60 - 371
Target Start/End: Original strand, 45476802 - 45477113
Alignment:
| Q |
60 |
ttgtttaaattctagtgatgaattaatccggtttgttgaactaaccggtattcctgttgcgagtactttaatgggacttggttgttaccctattggaggt |
159 |
Q |
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| T |
45476802 |
ttgtttgaattctagtgatgaattgaagcggtttgtggagttaactggtgttcctgttgctagtactttgatgggattaggtagttatcctattggaggt |
45476901 |
T |
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| Q |
160 |
gaatattctctttcaatgttgggtttgcatggtacggtttatgctaattatgctgttgataatagtgatttgttgcttgcttttggggttaggtttgatg |
259 |
Q |
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| T |
45476902 |
gaacattctctttcaatgttgggtatgcatggaactgtttatgctaattatgctgttgataatagtgatctgttgcttgcttttggggttaggtttgatg |
45477001 |
T |
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| Q |
260 |
atagagttactggaaagttagaaacttttgctagtagggctaagattgttcatatagatattgattcagctgagattgggaagaataagattccacatgt |
359 |
Q |
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| T |
45477002 |
atagagttactggaaagttagaagcttttgctagtagggctaagattgttcatatagatattgattcagctgagattgggaagaataagattccacatct |
45477101 |
T |
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| Q |
360 |
ttcgatctgtgc |
371 |
Q |
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| T |
45477102 |
gtcgatttgtgc |
45477113 |
T |
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