View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19965_low_15 (Length: 378)
Name: NF19965_low_15
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19965_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 13 - 361
Target Start/End: Original strand, 5656143 - 5656488
Alignment:
| Q |
13 |
aaaattatatgattgatacccaatatttctagagttgattgtgagaactgagagttaaggaacagaataataaagaaattgaagatcatatccactctaa |
112 |
Q |
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| T |
5656143 |
aaaattatttgattgatacccaatatttctagagttgattgtaagaactgagagttaaggaacagaatga----gaaattgaagatcatatccactctaa |
5656238 |
T |
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| Q |
113 |
acatttcacaaacgcattaaacatttcccataagaaaatatgaaagnnnnnnnnagcaagcagagcaaccatccacgtgtaaataataatacatgaagga |
212 |
Q |
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| T |
5656239 |
acatttcacaaacgcattaaacatttcccataagaaaatatgaaagttctttttagcaagcagagcaaccatccacgtgtaaataataatacatgaagga |
5656338 |
T |
|
| Q |
213 |
atcaggactcacatgcgtcaggatttactgt-gtccatatctggaagttgctttagtcgctggcacaagttaagtttggttgtgtctgaagtctgatgtg |
311 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5656339 |
atcaggactcacatgcgtcaggatttactgttgtccatatctggaagttgctttagtcgctggcacaagttaagtttggttgtgtctgaagtctgatgtg |
5656438 |
T |
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| Q |
312 |
acaagcgtacatattctatgaactgcaatctcatactcatagtttggtta |
361 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
5656439 |
acaagcgtacatattctatgaactgcaatatcatactcatagtttggtta |
5656488 |
T |
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