View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19965_low_17 (Length: 377)
Name: NF19965_low_17
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19965_low_17 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 2620127 - 2620351
Alignment:
| Q |
1 |
agttgctattcataagtttcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaaggagaatata |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
2620127 |
agttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagcattaaggagaatata |
2620226 |
T |
|
| Q |
101 |
ctttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatatcaatgttgccacaaggatatgata |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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|
| T |
2620227 |
ctttttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaaggatatgata |
2620326 |
T |
|
| Q |
201 |
ctcaggttagtgttgattgcttttg |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2620327 |
ctcaggttagtgttgattgcttttg |
2620351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 2432852 - 2433079
Alignment:
| Q |
1 |
agttgctattcataagtttcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaaggagaatata |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
2432852 |
agttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagcattaaggagaatata |
2432951 |
T |
|
| Q |
101 |
ctttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatatcaatgttgccacaaggatatgata |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2432952 |
ctttttggaagagaggatgctacatatgaagaaattgtggatgctgccaaagcttccaatgctcataatttcatatcaatgttgccacaaggatatgata |
2433051 |
T |
|
| Q |
201 |
ctcaggttagtgttgattgcttttgtca |
228 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |
|
|
| T |
2433052 |
ctcaggttagtgttaattacttttgtca |
2433079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 2677457 - 2677230
Alignment:
| Q |
1 |
agttgctattcataagtttcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaaggagaatata |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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|
| T |
2677457 |
agttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagcattatggagaatata |
2677358 |
T |
|
| Q |
101 |
ctttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatatcaatgttgccacaaggatatgata |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2677357 |
ctttttggaagagaggatgctacatatgaagaaatcgtggatgctgctaaagcttctaatgctcataatttcatttcaatgttgccacaaggatatgata |
2677258 |
T |
|
| Q |
201 |
ctcaggttagtgttgattgcttttgtca |
228 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |
|
|
| T |
2677257 |
ctcaggttagtgttaattacttttgtca |
2677230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 2572621 - 2572410
Alignment:
| Q |
1 |
agttgctattcataagtttcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaaggagaatata |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
2572621 |
agttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaagcattaaggagaatata |
2572522 |
T |
|
| Q |
101 |
ctttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatatcaatgttgccacaaggatatgata |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
2572521 |
ctttttggaagagaggatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaaggatatgata |
2572422 |
T |
|
| Q |
201 |
ctcaggttagtg |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2572421 |
ctcaggttagtg |
2572410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 2586437 - 2586668
Alignment:
| Q |
1 |
agttgctattcataagtttcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaaggagaatata |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
2586437 |
agttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtgagtcaagaacctgctttgtttgcaacaagcatcaaggagaatata |
2586536 |
T |
|
| Q |
101 |
ctttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatatcaatgttgccacaaggatatgata |
200 |
Q |
| |
|
||||||||||||||| ||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2586537 |
ctttttggaagagaggatgctacatttgaagatgttgtggatgctgctaaagcttctaatgctcataatttcatttcaatgttgccacaaggatatgata |
2586636 |
T |
|
| Q |
201 |
ctcaggttagtgttgattgcttttgtcaatat |
232 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
|
|
| T |
2586637 |
ctcaggttagtgttgattgcttttgtaaatat |
2586668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 2448719 - 2448930
Alignment:
| Q |
1 |
agttgctattcataagtttcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaaggagaatata |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2448719 |
agttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagcattaaggagaatata |
2448818 |
T |
|
| Q |
101 |
ctttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatatcaatgttgccacaaggatatgata |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
2448819 |
ctttttggaagagaggatgctacatatgaagatgttgtggatgctgctaaagcttccaatgctcataatttcatttcattgttgccacaaggatatgata |
2448918 |
T |
|
| Q |
201 |
ctcaggttagtg |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2448919 |
ctcaggttagtg |
2448930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 2600199 - 2599989
Alignment:
| Q |
1 |
agttgctattcataagtttcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaaggagaatata |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2600199 |
agttgctattcataagttgcaacttaagtggcttaggtcacaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagcattaaggagaatata |
2600100 |
T |
|
| Q |
101 |
ctttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatatcaatgttgccacaaggatatgata |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| ||| |||||||||||| |||||||| |
|
|
| T |
2600099 |
ctttttggaagagaggatgctacatatgaagaaattgtgaatgctgctaaaacttctaatgctcataatttcatttcattgttgccacaagtatatgata |
2600000 |
T |
|
| Q |
201 |
ctcaggttagt |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
2599999 |
ctcaggttagt |
2599989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 2645019 - 2644808
Alignment:
| Q |
1 |
agttgctattcataagtttcaacttaagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagtattaaggagaatata |
100 |
Q |
| |
|
|||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2645019 |
agttgccattcataagttgcaacttcagtggcttaggtctcaaatgggtttagtaagtcaagaacctgctttgtttgcaacaagcattaaggagaatata |
2644920 |
T |
|
| Q |
101 |
ctttttggaagagagaatgctacatatgaagaaattgtggatgctgctaaagcttccaatgctcataatttcatatcaatgttgccacaaggatatgata |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
2644919 |
ctttttggaagagaggatgctacatatgaagatgttgtagatgctgctaaagtttccaatgctcataatttcatttcattgttgccacaaggatatgata |
2644820 |
T |
|
| Q |
201 |
ctcaggttagtg |
212 |
Q |
| |
|
| |||||||||| |
|
|
| T |
2644819 |
cgcaggttagtg |
2644808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 17872740 - 17872688
Alignment:
| Q |
56 |
agtcaagaacctgctttgtttgcaacaagtattaaggagaatatactttttgg |
108 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
17872740 |
agtcaagaacctgctttatttgcaacaagcattaaagagaatataatttttgg |
17872688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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