View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19965_low_18 (Length: 340)

Name: NF19965_low_18
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19965_low_18
NF19965_low_18
[»] chr5 (2 HSPs)
chr5 (155-321)||(29784691-29784857)
chr5 (99-155)||(14717337-14717393)
[»] chr7 (7 HSPs)
chr7 (218-321)||(21906286-21906389)
chr7 (1-155)||(21906759-21906913)
chr7 (93-159)||(30017471-30017537)
chr7 (104-153)||(31772105-31772154)
chr7 (100-157)||(45429313-45429370)
chr7 (93-152)||(18358786-18358845)
chr7 (99-155)||(28243159-28243215)
[»] chr6 (3 HSPs)
chr6 (81-151)||(24341474-24341543)
chr6 (71-152)||(33508658-33508739)
chr6 (100-157)||(26180604-26180661)
[»] chr3 (2 HSPs)
chr3 (71-152)||(35970409-35970490)
chr3 (93-155)||(8173125-8173187)
[»] chr4 (2 HSPs)
chr4 (99-155)||(31053041-31053097)
chr4 (89-155)||(10355230-10355296)
[»] chr8 (1 HSPs)
chr8 (93-152)||(10172473-10172532)
[»] chr1 (3 HSPs)
chr1 (129-160)||(52066867-52066898)
chr1 (129-159)||(16306515-16306545)
chr1 (93-150)||(16234083-16234140)
[»] chr2 (1 HSPs)
chr2 (100-150)||(24080357-24080407)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 155 - 321
Target Start/End: Complemental strand, 29784857 - 29784691
Alignment:
Q  155 atacaaagtgtatatgaattaaatccacttaaattatgtatggggtttgattttcaggtagatgatgaagatgatgaaaaagcagtgataggattttgga 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29784857 atacaaagtgtatatgaattaaatccacttaaattatgtatggggtttgattttcaggtagatgatgaagatgatgaaaaagcagtgataggattttgga 29784758  T
Q  255 gtgcatttagttggttggtgggtatgacattggtcatatctgtgctttctgagtatgttgtgggaac 321  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29784757 gtgcatttagttggttggtgggtatgacattggtcatatctgtgctttctgagtatgttgtgggaac 29784691  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 14717393 - 14717337
Alignment:
Q  99 attattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatgaaaa 155  Q
    ||||||||||| ||||||| | ||||  |||||||  ||||||||||||||||||||    
T  14717393 attattttacacatgcatctaatgatgtgttgtcacatcaattaatgaatatgaaaa 14717337  T

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Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 218 - 321
Target Start/End: Complemental strand, 21906389 - 21906286
Alignment:
Q  218 gatgaagatgatgaaaaagcagtgataggattttggagtgcatttagttggttggtgggtatgacattggtcatatctgtgctttctgagtatgttgtgg 317  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21906389 gatgaagatgatgaaaaagaagtgataggattttggagtgcatttagttggttggtgggtatgacattggtgatatctgtgctttctgagtatgttgtgg 21906290  T
Q  318 gaac 321  Q
    ||||    
T  21906289 gaac 21906286  T

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Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 21906913 - 21906759
Alignment:
Q  1 cacaagaggttagtaataattatgtgatttcacattttagcacaattgtatatttatgtataccaaaggatttaattaggatactctctcattgtacgat 100  Q
    |||||||||||| || ||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||    
T  21906913 cacaagaggttattactaattatgtaatttcacatttgagcacaattgtatattgatgtataccaaaggatttaattagtatactctatcattgtacgat 21906814  T
Q  101 tattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatgaaaa 155  Q
    ||| ||||| ||||||| | |||||| ||   |||||||||||||||||||||||    
T  21906813 tatcttacacatgcatctaatgatactttactatgtcaattaatgaatatgaaaa 21906759  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 30017537 - 30017471
Alignment:
Q  93 tgtacgattattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatgaaaataca 159  Q
    ||||| ||||||||||| |||||||||  ||| |||||||| |||||||||||||||| ||||||||    
T  30017537 tgtacaattattttacacatgcatccaacgatgcgttgtcacgtcaattaatgaatatcaaaataca 30017471  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 31772105 - 31772154
Alignment:
Q  104 tttacatatgcatccactgatacgttgtcatgtcaattaatgaatatgaa 153  Q
    |||||| ||||||||  ||||| |||||||||||||||||||||||||||    
T  31772105 tttacacatgcatcccgtgatatgttgtcatgtcaattaatgaatatgaa 31772154  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 45429370 - 45429313
Alignment:
Q  100 ttattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatgaaaata 157  Q
    |||||||||| ||||||| | ||||  |||| ||||||||||||||||||||||||||    
T  45429370 ttattttacacatgcatcaaatgatttgttgccatgtcaattaatgaatatgaaaata 45429313  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 18358786 - 18358845
Alignment:
Q  93 tgtacgattattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatga 152  Q
    ||||| |||||||| || ||||||| | ||||  ||||||||||||||||||||||||||    
T  18358786 tgtaccattattttgcacatgcatcaaatgatgtgttgtcatgtcaattaatgaatatga 18358845  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 28243159 - 28243215
Alignment:
Q  99 attattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatgaaaa 155  Q
    ||||||||| | | ||||||| ||||  |||||||| ||||||||||||||||||||    
T  28243159 attattttaaacacgcatccaatgatgtgttgtcatatcaattaatgaatatgaaaa 28243215  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 24341543 - 24341474
Alignment:
Q  81 atactctctcattgtacgattattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatg 151  Q
    ||||| ||||||||||| ||||||||||||||||||| | ||||| |||| |||||||||| |||||||||    
T  24341543 atactttctcattgtacaattattttacatatgcatctaatgatatgttgacatgtcaatt-atgaatatg 24341474  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 33508739 - 33508658
Alignment:
Q  71 tttaattaggatactctctcattgtacgattattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatga 152  Q
    ||||||||| ||||||||||||||||| ||||||||||| || |||||| | ||   ||||| ||||||| |||||||||||    
T  33508739 tttaattagtatactctctcattgtacaattattttacacatacatccaattatgttttgtcgtgtcaatgaatgaatatga 33508658  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 157
Target Start/End: Original strand, 26180604 - 26180661
Alignment:
Q  100 ttattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatgaaaata 157  Q
    |||||||||||||||||| | | ||  |||||||| || |||||||||||||||||||    
T  26180604 ttattttacatatgcatctaatcatgtgttgtcatatccattaatgaatatgaaaata 26180661  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 35970409 - 35970490
Alignment:
Q  71 tttaattaggatactctctcattgtacgattattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatga 152  Q
    ||||||||| ||||||| | | |||| |||||||||||| |||||| || | ||  ||||||| ||||||||||||||||||    
T  35970409 tttaattagtatactctgtgagtgtatgattattttacacatgcattcaatcatgtgttgtcacgtcaattaatgaatatga 35970490  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 8173125 - 8173187
Alignment:
Q  93 tgtacgattattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatgaaaa 155  Q
    ||||| ||||||||||||||| ||| | ||||| ||||||| || ||||||||||||| ||||    
T  8173125 tgtacaattattttacatatgtatctaatgatatgttgtcacgttaattaatgaatataaaaa 8173187  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 31053097 - 31053041
Alignment:
Q  99 attattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatgaaaa 155  Q
    ||||||||||| ||||||||| ||||  ||||||  |||||||||||||||||||||    
T  31053097 attattttacacatgcatccaatgatgtgttgtcgcgtcaattaatgaatatgaaaa 31053041  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 10355230 - 10355296
Alignment:
Q  89 tcattgtacgattattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatgaaaa 155  Q
    ||||||| | |||||||||||||||||| || | ||   ||||||||||||||||||||||| ||||    
T  10355230 tcattgtccaattattttacatatgcattcaatcatgttttgtcatgtcaattaatgaatataaaaa 10355296  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 10172532 - 10172473
Alignment:
Q  93 tgtacgattattttacatatgcatccactgatacgttgtcatgtcaattaatgaatatga 152  Q
    ||||| ||||||||||| ||||||| | |||| |||||||| |||||||| |||||||||    
T  10172532 tgtacaattattttacacatgcatcaaatgatgcgttgtcacgtcaattagtgaatatga 10172473  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 160
Target Start/End: Complemental strand, 52066898 - 52066867
Alignment:
Q  129 tgtcatgtcaattaatgaatatgaaaatacaa 160  Q
    ||||||||||||||||||||||||||||||||    
T  52066898 tgtcatgtcaattaatgaatatgaaaatacaa 52066867  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 159
Target Start/End: Original strand, 16306515 - 16306545
Alignment:
Q  129 tgtcatgtcaattaatgaatatgaaaataca 159  Q
    |||||||||||||||||||||||||||||||    
T  16306515 tgtcatgtcaattaatgaatatgaaaataca 16306545  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 16234140 - 16234083
Alignment:
Q  93 tgtacgattattttacatatgcatccactgatacgttgtcatgtcaattaatgaatat 150  Q
    ||||| |||||||||||||| |||||| |  |||||||||| |||||||||| |||||    
T  16234140 tgtacaattattttacatatacatccaatattacgttgtcaggtcaattaataaatat 16234083  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 24080357 - 24080407
Alignment:
Q  100 ttattttacatatgcatccactgatacgttgtcatgtcaattaatgaatat 150  Q
    |||||||||||||||||||| ||||  |||||||| |||||||||| ||||    
T  24080357 ttattttacatatgcatccaatgatgtgttgtcatctcaattaatggatat 24080407  T

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