View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19965_low_19 (Length: 339)
Name: NF19965_low_19
Description: NF19965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19965_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 24 - 207
Target Start/End: Original strand, 11963636 - 11963819
Alignment:
| Q |
24 |
cttcttcaaatatatcatttatggatcttataacttcgtccctagggatacatgttaacgaatcctaaagtacaaatataatataatgaaaatgcaatat |
123 |
Q |
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| T |
11963636 |
cttcttcaaatatatcatttacggatcttataacttcgtccctaaggatacatgttaacgaatcctaaagtacaaatataatagaatgaaaatgcaatat |
11963735 |
T |
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| Q |
124 |
tttgactttaaaagttgaatgcaccacttttaagtgtgtctctatgtcctcttgaagatatacttgcttttaactagatcataa |
207 |
Q |
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| T |
11963736 |
tttgactttaaaagttgaatgcaccacttttaagtgcgtctctctgtcctcttgaagatatacttgcttttaactagatcataa |
11963819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 169 - 317
Target Start/End: Original strand, 18198319 - 18198469
Alignment:
| Q |
169 |
gtcctcttgaagatatacttgcttttaactagatcataacacacaaggactctatcgttgtaccattatggt--caccatttgtctactcctagacccac |
266 |
Q |
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| T |
18198319 |
gtcctcttgaagaatttcttgctctcaactagaacataacacacaatgactctatagttgtaccgtttcggtgacaccatttttctcctcctagtcccac |
18198418 |
T |
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| Q |
267 |
tagtgctatactcaaccttaagttgagcttgctccacctcgactttcaaat |
317 |
Q |
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| T |
18198419 |
tagtggaagaatccacatcaagttgagttttctccacctcaactttcaaat |
18198469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 284 - 325
Target Start/End: Original strand, 11963847 - 11963888
Alignment:
| Q |
284 |
ttaagttgagcttgctccacctcgactttcaaatccatacac |
325 |
Q |
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| T |
11963847 |
ttaagttgagcttgctccacctcgactttcaaatccatacac |
11963888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 317
Target Start/End: Complemental strand, 38281457 - 38281334
Alignment:
| Q |
196 |
actagatcataacacacaaggactctatcgttgtaccattatggt--caccatttgtctactcctagacccactagtgctatactcaaccttaagttgag |
293 |
Q |
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| T |
38281457 |
actagagcacaacacgcaaggactccatagttttaccattatggggccaccattagtctactcctagtcccactagtggaagactcaaactcaagttgag |
38281358 |
T |
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| Q |
294 |
cttgctccacctcgactttcaaat |
317 |
Q |
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| T |
38281357 |
ctttctccacctcaacttccaaat |
38281334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 37048364 - 37048432
Alignment:
| Q |
172 |
ctcttgaagatatacttgcttttaactagatcataacacacaaggactctatcgttgtaccattatggt |
240 |
Q |
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| T |
37048364 |
ctcttgaagaattccttgctctaaactatagcataacacacaaggactccatggttgtactattatggt |
37048432 |
T |
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